Glyma20g17440 - SoyBase

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Report for Sequence Feature Glyma20g17440

Feature Type:	gene_model
Chromosome:	Gm20
Start:	24512907
stop:	24517990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g17440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26230	AT	Annotation by Michelle Graham. TAIR10: uricase / urate oxidase / nodulin 35, putative \| chr2:11164956-11166968 FORWARD LENGTH=309	SoyBase	E_val: 3.00E-157	ISS
GO:0006144	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0004846	GO-mf	Annotation by Michelle Graham. GO Molecular Function: urate oxidase activity	SoyBase	N/A	ISS
KOG1599	KOG	Uricase (urate oxidase)	JGI		ISS
PTHR10395	Panther	URICASE AND TRANSTHYRETIN-RELATED	JGI		ISS
PTHR10395:SF1	Panther	TRANSTHYRETIN	JGI		ISS
PF01014	PFAM	Uricase	JGI		ISS
UniRef100_O04104	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uricase-2 isozyme 2 n=1 Tax=Glycine max RepID=URIC2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O04104	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uricase-2 isozyme 2 n=1 Tax=Glycine max RepID=URIC2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g17440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g17440

Paralog	Evidence	Comments
Glyma10g23790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g17440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g072400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g17440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g17440

Limit To All Plant Sequences

>Glyma20g17440.1   sequence type=CDS   gene model=Glyma20g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGCAGGAAGTGGTAGAAGGGTTCAAGTTCGAACAGAGGCACGGGAAAGAGCGCGTGAGAGTGGCGCGCGTGTGGAAGACGAGGCAGGGGCAGCACTTCGTTGTGGAGTGGCGCGTGGGCATCACTCTCTTCTCAGACTGCGTCAACTCGTATCTCCGCGATGACAACTCTGACATCGTTGCTACTGATACCATGAAAAACACAGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAG

Predicted protein sequences of Glyma20g17440

Limit To All Plant Sequences

>Glyma20g17440.1   sequence type=predicted peptide   gene model=Glyma20g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQQEVVEGFKFEQRHGKERVRVARVWKTRQGQHFVVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPFYFTEKYQEVKKVLADTFFGPPNGGVYSPSVQNTLYLMAKATLNRFPDIAYVSLKMPNLHFLPVNISNKDGPIVKFEDDVYLPTDEPHGSIQASLSRLWSKL*

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