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Report for Sequence Feature Glyma20g17426

Feature Type:gene_model
Chromosome:Gm20
Start:24456831
stop:24458095
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28950AT Annotation by Michelle Graham. TAIR10: RHO-related protein from plants 9 | chr4:14278289-14279705 FORWARD LENGTH=209 SoyBaseE_val: 3.00E-47ISS
GO:0006184GO-bp Annotation by Michelle Graham. GO Biological Process: GTP catabolic process SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
PTHR24072Panther FAMILY NOT NAMED JGI ISS
PTHR24072:SF352Panther JGI ISS
PF00071PFAM Ras family JGI ISS
UniRef100_A7UQU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: ROP-like protein n=1 Tax=Medicago truncatula RepID=A7UQU4_MEDTR SoyBaseE_val: 2.00E-50ISS
UniRef100_I3SR86UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SR86_LOTJA SoyBaseE_val: 4.00E-55ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g17426 not represented in the dataset

Glyma20g17426 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g072300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g17426.1   sequence type=CDS   gene model=Glyma20g17426   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGTGAACTGCGATTTCTCCAAATTTCCCAAAGGTCTTGCCTGCCAATTAACCCAATTCCAACAAGGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAAATGAGGAAACAAATTGGTGCAGCTGCTTACATTGAGTGCAGTTCAAAGAATCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTGGAACCTCCAAGGAGGAAACAAATGGCATGGAAGAAAAGTCATAGAAGGTCTGGTTGCTCATTTGTGTAA

>Glyma20g17426.1   sequence type=predicted peptide   gene model=Glyma20g17426   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVNCDFSKFPKGLACQLTQFQQGMPELRRFAPNVPIVLVGTKLDRGYVADHMGSNVITSAEGEEMRKQIGAAAYIECSSKNQQNVKAVFDTAIKVVLEPPRRKQMAWKKSHRRSGCSFV*







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