Glyma20g17400 - SoyBase

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Report for Sequence Feature Glyma20g17400

Feature Type:	gene_model
Chromosome:	Gm20
Start:	24447891
stop:	24451659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g17400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47800	AT	Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein \| chr5:19354171-19356126 FORWARD LENGTH=559	SoyBase	E_val: 2.00E-125	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
PF03000	PFAM	NPH3 family	JGI		ISS
UniRef100_G7ZZV4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZZV4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ABDD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ABDD related cluster n=1 Tax=unknown RepID=UPI000233ABDD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g17400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g072100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g17400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g17400

Limit To All Plant Sequences

>Glyma20g17400.2   sequence type=CDS   gene model=Glyma20g17400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAGGTCGCCCAATGGCAGTGTTCAGTATGTCTTGCCGACCATGGGATTAATTGATTATGTGCAGGTCAAATGGTCCTACACCTACACTAGGCCCGGTTATACCAGAAAACAGCATCATTCAGTCCCAAAGGATTGGTGGACTGAGGATGTGTCCGATCTTAACATAGATCTTTTCAGGTGCATATTAATGGCTATTAGATCAACTTATGTGCTCCCACCACAGCTTATTGGCGAAGCTCTGCATGTCTATGCCTGTAAGTGGCTACCCAGCATCACAAAGCTTAAAAGTTCATTCAATTCAGCAACACAAGCAGAAAAATCTAAAGCTGTGAGCCGAAAAATTCTGGAGACAATTGTCAGCATGATTCCTGCTAATAGAGGGTCGATTTCAGCTGGCTTCTTGTTAAGGCTTCTCAGCATTTCAAGCCCTCATGGTGTCTCCCCAGTGACCAAAACAGAACTAGTAAAGAGAGCCAACATACAGTTTGAGGAGGCAACAGTGAGTGACCTGCTTTATCCTTCAACATCCCCTTTGGACCAAAACTTTTATGACACGGAATTAGTCCTAGCAGTGTTGGAAAGTTACTTAAAGTTTTGGAAAAAAATCTCCCCTGCTACTGTGGATAACAGACACTTGATAAAATCAATCAGAAGTGTTGGTAAGCTCATTGATTCCTATCTTCAAGTGGTGGCAAGGGATGATAATATGCCAGTGTCAAAATTTGTCTCCCTGGCTGAAACTGTGCCAGCTATTGGCCGATTAGGGCATGATGATCTCTACCAGGCTATAAACATCTATCTTAAGGTGCATCCTGACCTGATCAAAGCAGACAAAAAGCGCTTGTGTGGGATTCTAGAGTGCCAAAAGCTGACCCCAGAAGTGCGTGCACATGCAGTCAAAAATGAATTTCTGCCACTGCGAACTGTGGTACAGCTCCTCTACTTTGAACAAGAAAAAGATTCTAAGGAAACCACTAGTTCCAAGCTGCAAAAGTCTCATGATCTACTTCTAGGAGCAAAGAAGAGAACAGCCACTAGAGATAGCCATGGCAAGCGATCTTTAGTAAACAAAGAAGAATTCAAGAGAGAAGAAGTCACAAGAAGAATCTCCCATGCTGAATGTAGAGAAAAGAGTCAACACAAAACTAAAAGATCAGATGGTAAGTTGGCATTGAACTTGGAAAAAAAGATGGTTATAAGAGGAGACAATGAACATATAGGATCAGAAAAGTTAAGGGGAGCCAAGGAAGAAAGAATGTCAAGCAGCAAGTCAAACTTGGATGCTAAGAAAAACATACAAAGGGCAAGAAAGAATATGAAAGGAGAAGATAGAGATAATAGTGATTATACCCTTGAAACACTCAGAGCAATCTTCATTTCCCTATATATGAACTTAGTAGCCTCTATTCTTATCATTTCTTTTTTACACGTGTCATAA

Predicted protein sequences of Glyma20g17400

Limit To All Plant Sequences

>Glyma20g17400.2   sequence type=predicted peptide   gene model=Glyma20g17400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRSPNGSVQYVLPTMGLIDYVQVKWSYTYTRPGYTRKQHHSVPKDWWTEDVSDLNIDLFRCILMAIRSTYVLPPQLIGEALHVYACKWLPSITKLKSSFNSATQAEKSKAVSRKILETIVSMIPANRGSISAGFLLRLLSISSPHGVSPVTKTELVKRANIQFEEATVSDLLYPSTSPLDQNFYDTELVLAVLESYLKFWKKISPATVDNRHLIKSIRSVGKLIDSYLQVVARDDNMPVSKFVSLAETVPAIGRLGHDDLYQAINIYLKVHPDLIKADKKRLCGILECQKLTPEVRAHAVKNEFLPLRTVVQLLYFEQEKDSKETTSSKLQKSHDLLLGAKKRTATRDSHGKRSLVNKEEFKREEVTRRISHAECREKSQHKTKRSDGKLALNLEKKMVIRGDNEHIGSEKLRGAKEERMSSSKSNLDAKKNIQRARKNMKGEDRDNSDYTLETLRAIFISLYMNLVASILIISFLHVS*

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