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Report for Sequence Feature Glyma20g17385

Feature Type:gene_model
Chromosome:Gm20
Start:24439521
stop:24440457
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g17385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31850AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:11431165-11433443 FORWARD LENGTH=603 SoyBaseE_val: 2.00E-92ISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
PTHR10108Panther METHYLTRANSFERASE JGI ISS
PTHR10108:SF55Panther PUTATIVE EARLY-RESPONSIVE TO DEHYDRATION STRESS PR JGI ISS
PF03141PFAM Putative methyltransferase JGI ISS
UniRef100_B9S1K1UniRef Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S1K1_RICCO SoyBaseE_val: 6.00E-95ISS
UniRef100_I1MLX5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MLX5_SOYBN SoyBaseE_val: 7.00E-137ISS

Expression Patterns of Glyma20g17385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g17385 not represented in the dataset
Glyma20g17385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g072000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g17385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g17385
>Glyma20g17385.1   sequence type=CDS   gene model=Glyma20g17385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAATCAAGATGGAAAACCAGTCACTCAGCCTGACAAGAGCAGGATTGTCCCTATGGCAATCATATTTGTGGTGCTATGTGGATCTTCTTTCCATATGGGTATAATCTTTTGTTCTGAGAAGGACAAATTTTTGTCAATTTATAGTGAGAAATCAATTGAATCCCACAAGGAGTCATCAATAATTCCTCTGCAAATTAAATACATTAGTTATCCTAAATGCAGCATTGACTTTCAAGATTACACTCCATGCACAGATCCAAGGAGATGGAAGAAGTACATCTCATATCGGCATACTTTGTTGGAACGCCATTGCCCTCCAAAATTGGAGAGGAAAGACTGCTTAGTTCCTCCCCCGGATGGATATAAGCTTCCAATTAGATGGCCAAAGAGCAGAGATGAATGCTGGTACAACAATGTTCCAAATGAGTGGATTAACAAGCAGAAGTCCAATCAACATTGGTTGAAAAAGGAAGGGGAGAAATTCATTTTTCCTGGTGGGGGTACTATGTTCCCTAATGGTGTTGCTAAATATGTTGATTTAATGCAAGATCTGATCCCTGAAATGAAAGATGGAACCATTCGAACTGCCATTTATACTAGATGTGGATTTAATTACACATGCTGA
Predicted protein sequences of Glyma20g17385
>Glyma20g17385.1   sequence type=predicted peptide   gene model=Glyma20g17385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNQDGKPVTQPDKSRIVPMAIIFVVLCGSSFHMGIIFCSEKDKFLSIYSEKSIESHKESSIIPLQIKYISYPKCSIDFQDYTPCTDPRRWKKYISYRHTLLERHCPPKLERKDCLVPPPDGYKLPIRWPKSRDECWYNNVPNEWINKQKSNQHWLKKEGEKFIFPGGGTMFPNGVAKYVDLMQDLIPEMKDGTIRTAIYTRCGFNYTC*






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