SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52060 | AT | Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:19310987-19312027 REVERSE LENGTH=346 | SoyBase | E_val: 3.00E-126 | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PF02485 | PFAM | Core-2/I-Branching enzyme | JGI | ISS | |
| UniRef100_I1NEE5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEE5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9C581 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=Q9C581_ARATH | SoyBase | E_val: 8.00E-123 | ISS |
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Glyma20g17273 not represented in the dataset |
Glyma20g17273 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g23750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g071600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g17273.1 sequence type=CDS gene model=Glyma20g17273 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCATCTCCATTGCTAGTATCCCTCACTCTTTTCCTTTCTCTCCCTCTCTTGTTGTTTCTATCTCCTCATATTTTGTCCCCTCCCGACGCCGACGACCTCACCCTCTTCCGCCGCGCCGCCGCCCCCCACACCACCTCCCACCTCTCCGCCACCCCTAAAATCGCCTTCCTCTTCCTCACCAATTCCAATCTCACCTTCTCCCCCCTCTGGGAAAAATTCTTCTCTTCCTCCGACCACCACCACCGCCTCTTCAACATCTACATCCACGCGGATCCCACCCAAAACATCGCTTTCCCCGGCGGCGGCGTCTTCCATCACCGCTCCCGCCTCGTCCCCGCGAAACCCACCGCCCGCGCCTCCCCCTCCCTCATCTCCGCCGCCCGCCGCCTCCTCGCCGCCGCCCTCCTCGACGACCCCCTCAACCACTACTTCGCCCTTCTCTCCCAACACTGCATCCCTCTTCACTCCCTTCAATTCACTCACAACTTTCTCTTCAAAAACCCCACTCACCCACATAAAAGCTTCATTGAGATTCTCTCCAACGAACCCAACCTCTTCGACCGCTACACCGCGCGTGGCGAACACGCGATGCTCCCAGAAGTACCCTTCTCCTCCTTCCGCGTGGGGTCGCAGTTCTTCATCCTCACTCGCCGCCACGCGCGCACGGTGGTGCGTGATATAAAGCTTTGGAACAAGTTTCGGCTTCCGTGTGTCACAGAAGAACCTTGTTACCCCGAAGAGCATTATTTTCCCACCCTTTTGTCCATGCAGGATCCGAATGGGTGTAGCGGGTTTACACTGACCCGGGTCAACTGGACCGGGTGCTGGGACGGGCACCCGCATCTGTACACCGCTCCGGAGGTGTCTCCGGAGCTGGTTCGCCGTCTGAGGGAATCGAATTCGAGCAGCTACCTGTATCTCTTCGCGAGGAAGTTCGCGCCTGAGTGTCTTCGGCCGTTGATGGAGATCGCCGATGACGTCATTTTCCGGGAGTGA
>Glyma20g17273.1 sequence type=predicted peptide gene model=Glyma20g17273 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSSPLLVSLTLFLSLPLLLFLSPHILSPPDADDLTLFRRAAAPHTTSHLSATPKIAFLFLTNSNLTFSPLWEKFFSSSDHHHRLFNIYIHADPTQNIAFPGGGVFHHRSRLVPAKPTARASPSLISAARRLLAAALLDDPLNHYFALLSQHCIPLHSLQFTHNFLFKNPTHPHKSFIEILSNEPNLFDRYTARGEHAMLPEVPFSSFRVGSQFFILTRRHARTVVRDIKLWNKFRLPCVTEEPCYPEEHYFPTLLSMQDPNGCSGFTLTRVNWTGCWDGHPHLYTAPEVSPELVRRLRESNSSSYLYLFARKFAPECLRPLMEIADDVIFRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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