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Report for Sequence Feature Glyma20g17221

Feature Type:gene_model
Chromosome:Gm20
Start:24261528
stop:24261767
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g17221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10410AT Annotation by Michelle Graham. TAIR10: SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516 SoyBaseE_val: 2.00E-29ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_B9SCI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SCI8_RICCO SoyBaseE_val: 7.00E-28ISS
UniRef100_I1MGT5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGT5_SOYBN SoyBaseE_val: 9.00E-32ISS

Expression Patterns of Glyma20g17221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g17221 not represented in the dataset
Glyma20g17221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g071400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g17221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g17221
>Glyma20g17221.1   sequence type=CDS   gene model=Glyma20g17221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTACTTTTTCTTTGAATCACGAAATAGCAAGGATGATCCAGTTGTCATATGGTTGACTGGAGGACCAGGGTGTGGTAGTGAATTGGCTTTGTTTTACGAAAATGGCCCTTTTCATATTGGCAACAACTTGTCTCTTATATGGAATGATTATGGTTGGGACCAGGTAACGAGTAATTTCCATGTTTCTTTTTTCCTTTACGGAGATAATGTGTCACTGGTGGTACAATCATAA
Predicted protein sequences of Glyma20g17221
>Glyma20g17221.1   sequence type=predicted peptide   gene model=Glyma20g17221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYFFFESRNSKDDPVVIWLTGGPGCGSELALFYENGPFHIGNNLSLIWNDYGWDQVTSNFHVSFFLYGDNVSLVVQS*






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