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Report for Sequence Feature Glyma20g17090

Feature Type:gene_model
Chromosome:Gm20
Start:24154076
stop:24155465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g17090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06600AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985 SoyBaseE_val: 1.00E-39ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
PTHR24006Panther FAMILY NOT NAMED JGI ISS
PTHR24006:SF265Panther JGI ISS
PF00917PFAM MATH domain JGI ISS
UniRef100_D3G9L7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin specific protease 12 n=1 Tax=Glycine max RepID=D3G9L7_SOYBN SoyBaseE_val: 3.00E-65ISS
UniRef100_I1NEE3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NEE3_SOYBN SoyBaseE_val: 1.00E-109ISS

Expression Patterns of Glyma20g17090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g17090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g17090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g17090
>Glyma20g17090.1   sequence type=CDS   gene model=Glyma20g17090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCAGATAGTGGGGCTGGTGCCTGGCACCAATTGAGAAATGCAAGCAATGGGGGGATGGTGATGTTCTTGTCTTTTGTTCATTTTGTTGGGATTAATGTTGTGTATTCAGACCAAGCAGAAAACATGAGTACAGTGGATGCTCCAACAGTGGATGATACACCAGCTGCGAGATTCACTTGGACCATTGACAATTTTTCTAGTATTCCCAAAAAATTATTTTCTGACATTTTCTGTGTTGGGGGCTATAAGTGGCGAATACTTATATTTCCAAAGGGGAATGGTGGTGACCATCTGTCAATGTATGTGGATGTTGCAGATTCAGCTACATTGCCCTATGGTTGGAGTAGATATGCCCATTTCAACTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATAAGAAAAGAGAAGAACCCAACCCTCAAGGTTCCTAAACCTCTTCAGGTTTATTCCTGA
Predicted protein sequences of Glyma20g17090
>Glyma20g17090.1   sequence type=predicted peptide   gene model=Glyma20g17090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSDSGAGAWHQLRNASNGGMVMFLSFVHFVGINVVYSDQAENMSTVDAPTVDDTPAARFTWTIDNFSSIPKKLFSDIFCVGGYKWRILIFPKGNGGDHLSMYVDVADSATLPYGWSRYAHFNLTVVNQIHSKYSIRKEKNPTLKVPKPLQVYS*






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