Glyma20g17043 - SoyBase

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Report for Sequence Feature Glyma20g17043

Feature Type:	gene_model
Chromosome:	Gm20
Start:	24023554
stop:	24038896
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g17043

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02120	AT	Annotation by Michelle Graham. TAIR10: GRAM domain family protein \| chr1:395761-399720 FORWARD LENGTH=598	SoyBase	E_val: 0	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
KOG1032	KOG	Uncharacterized conserved protein, contains GRAM domain	JGI		ISS
PTHR23319	Panther	UNCHARACTERIZED	JGI		ISS
PF02893	PFAM	GRAM domain	JGI		ISS
UniRef100_D3G9M3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Vascular associated death 1 n=1 Tax=Glycine max RepID=D3G9M3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D3G9M3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vascular associated death 1 n=1 Tax=Glycine max RepID=D3G9M3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g17043

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g17043 not represented in the dataset	Glyma20g17043 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g17043

Paralog	Evidence	Comments
Glyma10g23630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g17043 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g070800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g17043

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g17043

Limit To All Plant Sequences

>Glyma20g17043.2   sequence type=transcript   gene model=Glyma20g17043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCAACATAGCGTATGAGATAATGATTTTTTTAATTTTCTTTTTAATTTTTTTCTATCGGTGCAGCTACCGACTTTGACTCAAAGCTCAGACCATAACATCGACATTCCTTTTAACAACGTTTCTTCTTCGGTTCCGTCGCCGTTAGTTAAAATAGCGTAAAACCTTCAACCACCGTTCTCTTTTCTCTTTTCACTAAATTTTCAGATCTACGATTCTCTCTCTCTTCGATGGCTTCCACGGTTGTTGCGGCCGCCGTGAGGAGTGACGTGCCGCCTCGGCAGCCGGTGGATCCTTCGGCGTCGTCCTCCCCCGACGTCGCTGATCGGAGCGATTCCTTCAATTCCTCTCCCAACCACTTCTCCGACACTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGCCAATTGTTCCGTCTTCCACTGGAGGAAGTCCTCATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACAAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTAGCCGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACATGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCAGAGTCCAGCTGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTTATATAACTAACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGGCGCTTCCATCCATTGTAGATGATCCATTATTGACGGAAGATTCAGCGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAATTGAATATTGATGCCCCAAATGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATCCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATAAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAATGTGGTGATAAAGACTTTAGGTGTTCTTCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATAGAGACGTCGCAAGAAGTCAGTGATGTACCTTACGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCTTTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTGGAGAATCTTCAGAAGGGTCACAGGAGCAAAGTAACCATACAAAGATACTAGCTACTTCCAATGCCTTTGATGCTACTACCCACAATGTCGGCTCTCATTTGCCGGGAAATTTCATCGAACCATCATCTGTTCCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTGTTGTCGCTCTGATTTTCTTCATTCAGTGTAGCATACTTGTGCTGTTGGCTAGACCTCAACACATACATATGAACACTCCTGTAGACATCACGAATAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGTTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAACCAACTAAAGGACCTAGAACACAAGTAGCTACCAAATTTCATTGTTGAATCATATCCTTCTTATAGCATTTTTTTGTATATTCATGTGATATATAGATATGACATTTAATTTTGTTGTAAATGAGAGGACTTTATGTTATACCCAAAATTAAAGAAATGAGGAACTTGTGATTTAGTTTGTTTGCCAGCATCCTAAAATAGGATGAAATGCAATGGACCACTATTATAATTTTAAGGATTAATTAAACTTTGTTTCTATGTGAGTTTTTTTTCGTTGGTCAGAAACTACAAATGTCTCCTAATTCACTAGGTTAAAAATT

Coding sequences of Glyma20g17043

Limit To All Plant Sequences

>Glyma20g17043.1   sequence type=CDS   gene model=Glyma20g17043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCACGGTTGTTGCGGCCGCCGTGAGGAGTGACGTGCCGCCTCGGCAGCCGGTGGATCCTTCGGCGTCGTCCTCCCCCGACGTCGCTGATCGGAGCGATTCCTTCAATTCCTCTCCCAACCACTTCTCCGACACTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGCCAATTGTTCCGTCTTCCACTGGAGGAAGTCCTCATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACAAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTAGCCGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACATGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCAGAGTCCAGCTGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTTATATAACTAACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGGCGCTTCCATCCATTGTAGATGATCCATTATTGACGGAAGATTCAGCGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAATTGAATATTGATGCCCCAAATGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATCCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATAAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAATGTGGTGATAAAGACTTTAGGTGTTCTTCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATAGAGACGTCGCAAGAAGTCAGTGATGTACCTTACGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCTTTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTGGAGAATCTTCAGAAGGGTCACAGGAGCAAAGTAACCATACAAAGATACTAGCTACTTCCAATGCCTTTGATGCTACTACCCACAATGTCGGCTCTCATTTGCCGGGAAATTTCATCGAACCATCATCTGTTCCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTGTTGTCGCTCTGATTTTCTTCATTCAGCAGTGTAGCATACTTGTGCTGTTGGCTAGACCTCAACACATACATATGAACACTCCTGTAGACATCACGAATAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGTTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAACCAACTAAAGGACCTAGAACACAAGTAG

>Glyma20g17043.2   sequence type=CDS   gene model=Glyma20g17043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCACGGTTGTTGCGGCCGCCGTGAGGAGTGACGTGCCGCCTCGGCAGCCGGTGGATCCTTCGGCGTCGTCCTCCCCCGACGTCGCTGATCGGAGCGATTCCTTCAATTCCTCTCCCAACCACTTCTCCGACACTGAAATTCAGTTACAAACTCCAGACGTATTGAAGAGTGAAGAGTATCGCCAATTGTTCCGTCTTCCACTGGAGGAAGTCCTCATTGAAGATTTTAATTGTGCCCTCCAGGAAAACCTACTTATTCAGGGTCATATGTACCTCTTTGTCAACTTCATTTGTTTCTACTCAAACATATTTGGATATGAGACAAAGAAAATAATCCCATTCCCTGAAGTCACAAGTGTAAGGAGGGCAAAGACGGCTGGGCTCTTTCCCAATGCCATTGAGATTCTAGCCGGAAACAAGAAGTACTTCTTTGCATCCTTCCTATCCCGTGATGAAGCTTTCAGGATTATTAATGAGGGATGGTCGCGACATGGCAATGGAGCCATAGCAATTATGGAACAGAAGGAATCAATGTCAGAGTCCAGCTGCCAAGAGAATGGATTTGTAGCTGTTGAAAATGTCAAAAGTTCTTATATAACTAACAACGGATCACTTTCTACTGATCTGAGCAAAGATACGGCGCTTCCATCCATTGTAGATGATCCATTATTGACGGAAGATTCAGCGAAGCAATGCAGTGTAAAACAGGTTGCTGAACCTGAATTGAATATTGATGCCCCAAATGCTGCAAGTGTGAGTTGGAAGTGGAACGAGGAGGATATTGATGCCCCATCAATCCTTGAAGCATATACATGTGTTGCAGATTCAGTGTTTCCGATAAAGGTTGAAGACTTCTTTAGGTACTTATTCTCAGATGATGCTCTAAATTTTCTTGAGTCTTTTCGCCAAAAATGTGGTGATAAAGACTTTAGGTGTTCTTCGTGGCATCCTCAAGAGAAATTTGGGTATGCTCGTGAACTGTCATTTCAACATCCAATAAAAATTTATCTTGGAGCGAAATTTGGTGGCTGCCATGAGGTCCAGAAATTTCGTGTTTATAGGAACAGTCATTTGGTTATAGAGACGTCGCAAGAAGTCAGTGATGTACCTTACGCAGATTATTTCCGGGTTGAGGGACTGTGGAGTGTAGAGAGAGACAAGGATGAATCAAAAGAATGCTGCTTTTTGCGGGTATATGTGAATGTGGCATTTTCTAAAAAAACTATTTGGAAAGGCAAAATAATACAATCAACAATTGAAGAATGTCGAGATGCTTATGCGACATGGATAAACATGGCACATGAAATGTTGAAGCAGAAGAACCTTGAAAAACAAGCTCAAAATGGTGAAATCAATTTAGATAGAGAAGTGAAGACTGGAGAATCTTCAGAAGGGTCACAGGAGCAAAGTAACCATACAAAGATACTAGCTACTTCCAATGCCTTTGATGCTACTACCCACAATGTCGGCTCTCATTTGCCGGGAAATTTCATCGAACCATCATCTGTTCCACTGTTTAAAGAGTTTATGACGAAGTTCAGATCATCTTTGAGAAGTCATAGCAATCTTTCTCTGCTCCTTATTACTGTTGTCGCTCTGATTTTCTTCATTCAGTGTAGCATACTTGTGCTGTTGGCTAGACCTCAACACATACATATGAACACTCCTGTAGACATCACGAATAGGATGAACAATGAGGTCACTAGAAGTCCTTCAGACATAGCGTGGTTGGAGAAAAGAATTCATCACCTCAAAGATGAAATGTACATGGTTGAGAGTAGGCTTGAAAGGATGCGGTATGAACATTTACTTTTAAAAAACCAACTAAAGGACCTAGAACACAAGTAG

Predicted protein sequences of Glyma20g17043

Limit To All Plant Sequences

>Glyma20g17043.1   sequence type=predicted peptide   gene model=Glyma20g17043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTVVAAAVRSDVPPRQPVDPSASSSPDVADRSDSFNSSPNHFSDTEIQLQTPDVLKSEEYRQLFRLPLEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRAKTAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRHGNGAIAIMEQKESMSESSCQENGFVAVENVKSSYITNNGSLSTDLSKDTALPSIVDDPLLTEDSAKQCSVKQVAEPELNIDAPNAASVSWKWNEEDIDAPSILEAYTCVADSVFPIKVEDFFRYLFSDDALNFLESFRQKCGDKDFRCSSWHPQEKFGYARELSFQHPIKIYLGAKFGGCHEVQKFRVYRNSHLVIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCFLRVYVNVAFSKKTIWKGKIIQSTIEECRDAYATWINMAHEMLKQKNLEKQAQNGEINLDREVKTGESSEGSQEQSNHTKILATSNAFDATTHNVGSHLPGNFIEPSSVPLFKEFMTKFRSSLRSHSNLSLLLITVVALIFFIQQCSILVLLARPQHIHMNTPVDITNRMNNEVTRSPSDIAWLEKRIHHLKDEMYMVESRLERMRYEHLLLKNQLKDLEHK*

>Glyma20g17043.2   sequence type=predicted peptide   gene model=Glyma20g17043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTVVAAAVRSDVPPRQPVDPSASSSPDVADRSDSFNSSPNHFSDTEIQLQTPDVLKSEEYRQLFRLPLEEVLIEDFNCALQENLLIQGHMYLFVNFICFYSNIFGYETKKIIPFPEVTSVRRAKTAGLFPNAIEILAGNKKYFFASFLSRDEAFRIINEGWSRHGNGAIAIMEQKESMSESSCQENGFVAVENVKSSYITNNGSLSTDLSKDTALPSIVDDPLLTEDSAKQCSVKQVAEPELNIDAPNAASVSWKWNEEDIDAPSILEAYTCVADSVFPIKVEDFFRYLFSDDALNFLESFRQKCGDKDFRCSSWHPQEKFGYARELSFQHPIKIYLGAKFGGCHEVQKFRVYRNSHLVIETSQEVSDVPYADYFRVEGLWSVERDKDESKECCFLRVYVNVAFSKKTIWKGKIIQSTIEECRDAYATWINMAHEMLKQKNLEKQAQNGEINLDREVKTGESSEGSQEQSNHTKILATSNAFDATTHNVGSHLPGNFIEPSSVPLFKEFMTKFRSSLRSHSNLSLLLITVVALIFFIQCSILVLLARPQHIHMNTPVDITNRMNNEVTRSPSDIAWLEKRIHHLKDEMYMVESRLERMRYEHLLLKNQLKDLEHK*

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