Glyma20g17010 - SoyBase

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Report for Sequence Feature Glyma20g17010

Feature Type:	gene_model
Chromosome:	Gm20
Start:	23971533
stop:	23979508
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g17010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10650	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). \| chr3:3325562-3330819 REVERSE LENGTH=1309	SoyBase	E_val: 8.00E-105	ISS
GO:0006997	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleus organization	SoyBase	N/A	ISS
GO:0016973	GO-bp	Annotation by Michelle Graham. GO Biological Process: poly(A)+ mRNA export from nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005643	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore	SoyBase	N/A	ISS
GO:0034399	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear periphery	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_Q9LPN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F18K10.27 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPN4_ARATH	SoyBase	E_val: 3.00E-92	ISS
UniRef100_UPI000233DCD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DCD4 related cluster n=1 Tax=unknown RepID=UPI000233DCD4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g17010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g17010

Paralog	Evidence	Comments
Glyma10g23600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g17010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g070600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g17010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g17010

Limit To All Plant Sequences

>Glyma20g17010.1   sequence type=CDS   gene model=Glyma20g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCAGCCCGTGAAGAGAACCCTTATGAAGGCGGCGGCGACGGCGGATTCGGCAAATTCAGAAAACGGCCTTTCCGCAGAAGCCAAACGACGCCGTACGATCGTCCACCCACAGCGCTCCGAAACCCTAACCGAAACAACGGTTGGTTATCAAAGCTCGTCGATCCCGCACAGAGGCTCATCGCTTCCAGTGCTCACAAACTCTTCGCCTCCGTTTTCCGCAAACGCCTTCCTCCACCACAAGAAGCAGTACAGGAAGTGAGGGACCATCACCAGGAAACAGCTCTCATTATTGCAAATGAATCCTCTGCCAAGCAAGTAGTAGGTGAAACTAGTGTCCAAATTAACTGTTCTGATGGAGATGGATTAACTGAACTTGAGAAGCTATTAAAGCAGAAGACTTTCACCAGATCAGAGATAGAGCATTTGACAGAACTTATGCGTTCAAGAACTGTGGGTTCATCTGTTGTGGAAGAAGGGACGAGCACAGAAGTGGTTCCATCAGATCCAATTTTGCCTCGTGAACAAAAGGAAGAATATCCCAAAACTCCAGATCCAGAAAATGCGATTGAAAACCAGCTTGTTTCAACCCCATACGTTACTAAGGCTATCTCCACTGTTTCTGTTGACGATGTTGCTTCCCCTGCGGAGCTTGCCAAGGCTTACATGGGTAGCAGGCCTTCAAAGTTGTCCCCTTCAATGTTAGGATTGCGAAGTTCTCCCAGGGAGGATCCATTTCTACTAAAAAATCAGCATGTTGCTCAGAAATCCCCTGTTAAGTCAATTGTGCCGAAGGCTACTAACCTTGCTAGGGTTCATGAAAATGGTTTTGTGACCCCAAGATCTCATGGAAGATCAGCCATATATAGTATGGCTCGAACGCCATATGCAAGAGTTTATCCAGGCTCTATGTCCAAGGGTGCTGGGGTTGCTGTTGAAGGTGATCCGTCATCTTCAGCTCAGCATGTGATTGATCATGATATGCTTTCTGGATCTAAACACGGGGTATTAAAACGTAGAAGTTCTGTATTAGATAATGATATAGGATCCTTTGGTCCTATACGCCGAATCCGTCACAAGTCTAATCTTCTATCTACTAAAAGCTTGACCTTACCTTATTCGGGAAATGCTCTAGCTATAGATAGGAGTGGAGTTGGCATTGATGCTGCTCAGCAACCTTCATCTTCCATGCAGAAGCCTAATCTGTTGGGTGAAGCTAAGCATAGGCATACAAAATTGTCTGCAGAAAATGTAGATGACATCATGCCTCGTACCAGTATTCCTCCTTTACCCTCAAAATCTAGTGAGATGGCCTCAAAAATACTGATGCAGCTTGATAAGTTGGTTTCTCCTAAAGAAAAATCTCCAACAAAGTTGTCCTCATCCATGTTACGAGGACAGGCTCTTCGAAGTATGGAGACAGTAGATTCATCAAAATTCCTTGATAATGTATGGGATAATGGATTGGATGGCACACATGGAAATTTGTCTGCTGGTGCTCAAAAGTTAAAATCAAAGATAGATGAAACTGAGAGTGGTCAATCGAAACTTGTTGCTCCTACTGATGTATTAGTTCCTGTTGATGCATATGCTACAGCCCCTAAGAAGCAAGATATATCTATTTTAAAATCTGGAGATTCCTCTGGAACAAAATCCAATTCTCATCCTCCACAAAAGAAGAGGGCATTCCATATGAGTGCACCTGAGGATTATTTGGAGCTGGATGATGATGCCCTTCCTAATGGAGCTGTGTCTCCTTTCTCTACTTCGGGGAAAGAAACAACAGTCTCCACTGCTGTGGCTGATAAAACTATCTCTGCTGTTGAAACAGCTGTACTGGAAAAGCCCCCAGGTTCATCTGTGCTAATGCCATCCAAAAGTTTTACAATAGATGGTAAACCTCAAGTTAGGACAGCTGATTGGTCCAAAGTTGAAAAGAAGGTTGATGTACCAACCTCTATAACTTCATCCGTCTCTGATCCTATTTTTAAGCCAATTACGGCAGCTTCTAACACAAGTTTAGGCTTTAACCAATCTACTACACCAAATGGATCAGTTGCTAATCCTCCCCTATTTAACTTTGGGAATAAAGTTGTTCCATCGATGGAGCTGACGGCTGCTGATGCTCCACCACAGGACTCTACCAAGTCAGGTTCACTATTTGGTTTGGAGAAGGTTCCATTGTCAAAAGAGCCAGGGACTGATGCTCCTTTTGTTAATTCTGGGTTCAACAAAAATGTTGGCAATGTTTCACAAGTACCAGTTACTTTCTCTTCATCTGTTGGTGAATCTGCTGTGTTTAAATTTGGCTCTTCTTCTGACTCAAAGCCGATAAGCTCAATCAGCTCAACTACTGTTGCTGGTGCTTTTGATTCAATGCCAAAAGCTCTTGATTTAGATGATGCTGGTGCTAAGACCAATATAATAGCTGGTTTCTCTGATCGGTCATCTGAATCAGCTGTTTCTTCTGCAGCATTGATGCCGTCATTGACATCACCTGCAAATGTATTTACCTTTGGCAACAATTCAAATCAAAATAACGGACCTGCTGCTTCAAGCCCTACATTTTCCTCTCCATTCCCCCCTCTGACAAACAATTTTACGGGTCAGAATATATTCAGTAGCTCATCCCTTGCAGGAAGCATCAGCAGCGTTAGTGCAAATGTAACCTCCACTAGCACTGACACGGCAACTAGCACCCCTGCTGTAGTTGCTGCCAGCAATAGCAGTTCCTCCACTCAAGTCTCATCTTCATCTCCCACAACTTCATTTTTCAAATTTGGATCTACCCCTTCAGCACCAACAAGTTTACTTGTGTCATCTTCTGGCTCAGAACCGCTAGAAAACAAGAGTGGCACAGGGAGTGTCATTTTTGGAAGCTCTTCTGCTGCAATTGGAAGCACAGGGAGTGACATTTTTGGGTTTAGTACCCCAGCAATGACCGGAAATAGCCAGTCTCTGGGTTCTGTCTTTGGCACTACAAGTGGGTCTGTCCCTGGTACTCAGGTATCTTCTGGTACTAGTGGTTTTTCCACTTCATCTGAGAGTCAGTCGGTGGCATTTGGTTCATCTGCATCAGCCTCATTGTTTGGGTTGACTGGGAGCACAACTTTTTCTTCAGGGAGTTCATTGTTTTCTTCTTCAAGTTCCGTCCCAAACAATTTCAATGCGGGTACAACTTCTGGGCAAAGTACCCCTGCTGCTTCTTCAGAAACCAACCCTGTTAGCTCCAGTAGTGGCATGAGTTCTTCTGTGTTTGGGCTTTCAAGTTGGCAGCCCAGCAAGTCTTCATTTGGTTCTTCCTTTAGTTCATCATCATCACCTTCCTCTGGGTTTTCCTTTGGTTCTTCTTTTAGTTCATCGTCTTCATCTACCCCGGGGTTTTCCTTTGGAGGAACATCCACATCTTCTGTTACTTCTTCCAGTTCCCCCATGATGTTTGGATCATCTGCTGTTGCATCAACTCCTCAGTTTTCATTCACTTCTGCTACAGCTACTACCAACACACAGCCTGCTTTTGGAAGTTCTACTCCTGCTTTCACATTTGGTGGTTCAGCTCTAGCTCCTGTTAATAATGATCAGATGAGCATGGAGGACAGTATGGCAGAGGACACAGTTCAAGCAACTCCACCCGCAACTCCCGTATTTGGTCAACAACCTGCCCCACTTCAATCAAATTTTGCATTTGGAGCATTAGCTCCAACAGGAGTGAGTCCTTTCCATTTCGCAACTCAACAGAACATTGCTCCACAGAATCCATCTCCATTTCAGGCTTCTGGCAGTCTTGAGTTTAATGCTGGAGGGAGTTTCTCATTGGGCACTGGTGGGGCTGACAAGGCGGGTCGAAAATATGTGAAAGTTAGGCATAATAGACCGCGGAAGAAGTAA

Predicted protein sequences of Glyma20g17010

Limit To All Plant Sequences

>Glyma20g17010.1   sequence type=predicted peptide   gene model=Glyma20g17010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPAREENPYEGGGDGGFGKFRKRPFRRSQTTPYDRPPTALRNPNRNNGWLSKLVDPAQRLIASSAHKLFASVFRKRLPPPQEAVQEVRDHHQETALIIANESSAKQVVGETSVQINCSDGDGLTELEKLLKQKTFTRSEIEHLTELMRSRTVGSSVVEEGTSTEVVPSDPILPREQKEEYPKTPDPENAIENQLVSTPYVTKAISTVSVDDVASPAELAKAYMGSRPSKLSPSMLGLRSSPREDPFLLKNQHVAQKSPVKSIVPKATNLARVHENGFVTPRSHGRSAIYSMARTPYARVYPGSMSKGAGVAVEGDPSSSAQHVIDHDMLSGSKHGVLKRRSSVLDNDIGSFGPIRRIRHKSNLLSTKSLTLPYSGNALAIDRSGVGIDAAQQPSSSMQKPNLLGEAKHRHTKLSAENVDDIMPRTSIPPLPSKSSEMASKILMQLDKLVSPKEKSPTKLSSSMLRGQALRSMETVDSSKFLDNVWDNGLDGTHGNLSAGAQKLKSKIDETESGQSKLVAPTDVLVPVDAYATAPKKQDISILKSGDSSGTKSNSHPPQKKRAFHMSAPEDYLELDDDALPNGAVSPFSTSGKETTVSTAVADKTISAVETAVLEKPPGSSVLMPSKSFTIDGKPQVRTADWSKVEKKVDVPTSITSSVSDPIFKPITAASNTSLGFNQSTTPNGSVANPPLFNFGNKVVPSMELTAADAPPQDSTKSGSLFGLEKVPLSKEPGTDAPFVNSGFNKNVGNVSQVPVTFSSSVGESAVFKFGSSSDSKPISSISSTTVAGAFDSMPKALDLDDAGAKTNIIAGFSDRSSESAVSSAALMPSLTSPANVFTFGNNSNQNNGPAASSPTFSSPFPPLTNNFTGQNIFSSSSLAGSISSVSANVTSTSTDTATSTPAVVAASNSSSSTQVSSSSPTTSFFKFGSTPSAPTSLLVSSSGSEPLENKSGTGSVIFGSSSAAIGSTGSDIFGFSTPAMTGNSQSLGSVFGTTSGSVPGTQVSSGTSGFSTSSESQSVAFGSSASASLFGLTGSTTFSSGSSLFSSSSSVPNNFNAGTTSGQSTPAASSETNPVSSSSGMSSSVFGLSSWQPSKSSFGSSFSSSSSPSSGFSFGSSFSSSSSSTPGFSFGGTSTSSVTSSSSPMMFGSSAVASTPQFSFTSATATTNTQPAFGSSTPAFTFGGSALAPVNNDQMSMEDSMAEDTVQATPPATPVFGQQPAPLQSNFAFGALAPTGVSPFHFATQQNIAPQNPSPFQASGSLEFNAGGSFSLGTGGADKAGRKYVKVRHNRPRKK*

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