Glyma20g16980 - SoyBase

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Report for Sequence Feature Glyma20g16980

Feature Type:	gene_model
Chromosome:	Gm20
Start:	23943200
stop:	23945969
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38110	AT	Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 6 \| chr2:15952816-15955364 REVERSE LENGTH=501	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010143	GO-bp	Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
GO:0090447	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity	SoyBase	N/A	ISS
PTHR15486	Panther	ANCIENT UBIQUITOUS PROTEIN	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_G7IDH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ER glycerol-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7IDH7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DCD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DCD3 related cluster n=1 Tax=unknown RepID=UPI000233DCD3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g16980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16980

Paralog	Evidence	Comments
Glyma10g23560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g070400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16980

Limit To All Plant Sequences

>Glyma20g16980.1   sequence type=CDS   gene model=Glyma20g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTTCAACCTTTCCAACGGTGAACAAGTGTACCTCTATTGGTAGGGAAAAGCACACGGTGGTTGCGGACATGGATGGAACTTTACTCATAGGTCGAAGTTCTTTCCCTTATTTTGCTCTCGTGGCCTTTGAGGCTGGTGGAATTCTTAGGCTTTTGTTCTATGTCTTGGCTTCCCCTATTGCTGCCTTGCTTTATTACTTCATCTCTGAGTCCGCAGGCATTCAGGTTCTCATCTTTGCCTCAATGGCTGGCATGAAAGTGTCGAGCATAGAGTCAGTGGCACGTGCGGTTCTTCCGAAGTTCTACGCTGGTGATGTTCACCCCGAGTCGTGGCGCGTGTTCTCATCATGTGGGAAGCGTTGTGTGCTCACGGCCAATCCGAGGGTGATGGTGGAACCTTTCTTGAAGGAATTTTTGGGTGCAGACATGGTTTTGGGCACTGAGATTGCGAGCTATAAGGGAAGGGCAACTGGGTTGATTTGCAAGCCGGGGATACTTGTTGGGAAGAAGAAAGCCGATGCTCTAAAGAAGGCTTTTGGAGAGGAGAAGCCAGATATTGGGCTTGGAGATAGACAAACAGATGCTCCCTTCATGGCTTTATGCAAGGAGGGTTACATAGTCCCACCCAAACCCGAGGTGAAATCAGTGTCAACAGACAAGCTGCCAAAGCCCATAATCTTCCACGATGGAAGACTTGTCCAGAAGCCAACACCTCTCATTGCCCTCCTCACAATTCTCTGGATGCCCATAGCCTTTCCCTTAGCATGCCTTCGCATGGCCGCAGGTTCCCTCCTCCCCATGCACTTGGTCTACTATGCCTTTTGGGCCCTTGGCGTCCGTGTCATAATTAAGGGCAACCCACCCCCAAAAGTCACAAAATCTAACCCTAACCCTAACCCTAACAACAACAACGATTCTGGGGTTCTCTTTATATGCTCCCACCGCACCCTGCTTGACCCCATCTTCCTCTCTGCCGCCCTCGGCCGCCCCATCCCCGCCGTCACCTACTCCGTCTCTCGCCTCTCTGAGATCATCTCCCCCATCAAGACCGTTCGCCTCAATCGCGACCGTGCAATTGACGCCGCCATGATCAAGAAACTCCTCCAAGAAGGCGACCTAGCAATATGCCCTGAAGGGACAACTTGTAGAGAACCATTTCTTCTTAGATTCTCAGCTTTGTTCGCCGAACTCACCGATGAACTAGTCCCTGTGGCCATGGTGAACCGCATGAGCATGTTCCATGGAACAACTGCACGAGGGTGGAAAGGGATGGACCCATTTTACTTCTTCATGAACCCTAGTCCTGCTTATGAGGTCACTTTTTTGAACAAGTTGCCCAAAGAGTTGACTTGTGGGGCAGGAAAGTCAAGCCATGACGTGGCCAACTACATTCAACGGGTTATTGCCGCGACTTTGTCGTACGAGTGCACTGGGTTTACGAGGAAGGACAAGTACAGGGCACTTGCTGGGAATGATGGGGTTGTGGTTGAGAAGGGCCATATTTTGAAGGCCAACAAAGTTATGGGTTGCTGA

Predicted protein sequences of Glyma20g16980

Limit To All Plant Sequences

>Glyma20g16980.1   sequence type=predicted peptide   gene model=Glyma20g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSTFPTVNKCTSIGREKHTVVADMDGTLLIGRSSFPYFALVAFEAGGILRLLFYVLASPIAALLYYFISESAGIQVLIFASMAGMKVSSIESVARAVLPKFYAGDVHPESWRVFSSCGKRCVLTANPRVMVEPFLKEFLGADMVLGTEIASYKGRATGLICKPGILVGKKKADALKKAFGEEKPDIGLGDRQTDAPFMALCKEGYIVPPKPEVKSVSTDKLPKPIIFHDGRLVQKPTPLIALLTILWMPIAFPLACLRMAAGSLLPMHLVYYAFWALGVRVIIKGNPPPKVTKSNPNPNPNNNNDSGVLFICSHRTLLDPIFLSAALGRPIPAVTYSVSRLSEIISPIKTVRLNRDRAIDAAMIKKLLQEGDLAICPEGTTCREPFLLRFSALFAELTDELVPVAMVNRMSMFHGTTARGWKGMDPFYFFMNPSPAYEVTFLNKLPKELTCGAGKSSHDVANYIQRVIAATLSYECTGFTRKDKYRALAGNDGVVVEKGHILKANKVMGC*

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