Report for Sequence Feature Glyma20g16950
Feature Type: gene_model
Chromosome: Gm20
Start: 23834447
stop: 23841233
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g16950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G51180 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:20797360-20799929 FORWARD LENGTH=357
SoyBase E_val: 3.00E-170 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG4372
KOG
Predicted alpha/beta hydrolase
JGI ISS
PTHR12482 Panther
UNCHARACTERIZED
JGI ISS
PF05057 PFAM
Putative serine esterase (DUF676)
JGI ISS
UniRef100_B9R9Y4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9R9Y4_RICCO
SoyBase E_val: 4.00E-169 ISS
UniRef100_I1LAF1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAF1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g16950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g16950
Paralog Evidence Comments
Glyma10g23470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g16950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g070200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g16950
Coding sequences of Glyma20g16950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g16950.2 sequence type=CDS gene model=Glyma20g16950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGGAAGGAGGTTTGCGCGTCGGAGTCGGCGGTTGATGGAAGCCGCGACGTTTGGAGTTCGGAGCCCTCGCTCGCTTCCTCCGCGGATCACCTCGTTGTAATGGTGAACGGAATTCTCGGACGTGAGACGGATTGGAAATATGCTGCGGAGAAATTTGTCAAGGAGTTGCCAGATAAAGTGTTTGTTCACTGTAGCGAACGAAATGTGTCTATGCATACACTAGATGGTGTGGATGTAATGGGAGAGAGATTAGCAGAAGAGGTACTTGAAGTGATTAAAAGAAAGCCAAATATGCGTAAGATATCCTTTGTTGCACACTCAGTTGGAGGATTAGTGGCACGATATGCAATTGGGAGGCTGTATAGGCCACCTGAAAAAGGATCAATGGCGGACTCATGCAATGACGAAAGTAAGGAGGGCTCTGTGGGTACAATTGGTGGCTTGGAGGCTATGAATTTCATTGCTGTTGCCACACCTCATCTAGGATCAAGGGGAAATAAGCAGGTTCCATTTCTTTTGGGGGTACCTGCTTTTGAGAAGGTTGCTAGTTGTGTTATTCATTTTATTTTTAGAAGAACAGGTCGGCATCTTTTCCTTACTGATGATGATGAAGGAAAACCTCCATTGCTTGAACGCATGGTTCAAGACTACGGTGATTTGTATTTCATGTCTGCATTGTGTGCTTTCAAACGCCGATTTGCATATTCAAATGTGGACTATGATCATATTGTTGGCTGGAGAACATCATCCATCAGACGTCAGAGTGAACTTGCAAATTGGAAGGATACCATCAATGAAAAATATCCACATGTTGTATATGAAGAGCATTGCAAAGCATGTTCTGATGCTGAGCAGTGTGACTCAACAGAAGATTACAGCTATGACAAGATAGAAGAGGGGCTTGTAACAGGCTTATCTCGAGTGTCTTGGGAAAAAGTAGATGTTAGCTTCCGCAATAGCAAGAATAGATTTGCTTCTCATACTATCATTCAGGTCAAAGACCAAATCACCCAAATAGAAGGTGCAGATGTTATCCAGCATATGATTGATTATTTTCTTGTCTAG
Predicted protein sequences of Glyma20g16950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g16950.2 sequence type=predicted peptide gene model=Glyma20g16950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGKEVCASESAVDGSRDVWSSEPSLASSADHLVVMVNGILGRETDWKYAAEKFVKELPDKVFVHCSERNVSMHTLDGVDVMGERLAEEVLEVIKRKPNMRKISFVAHSVGGLVARYAIGRLYRPPEKGSMADSCNDESKEGSVGTIGGLEAMNFIAVATPHLGSRGNKQVPFLLGVPAFEKVASCVIHFIFRRTGRHLFLTDDDEGKPPLLERMVQDYGDLYFMSALCAFKRRFAYSNVDYDHIVGWRTSSIRRQSELANWKDTINEKYPHVVYEEHCKACSDAEQCDSTEDYSYDKIEEGLVTGLSRVSWEKVDVSFRNSKNRFASHTIIQVKDQITQIEGADVIQHMIDYFLV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
