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Report for Sequence Feature Glyma20g16822

Feature Type:gene_model
Chromosome:Gm20
Start:23600290
stop:23607521
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g16822
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50240AT Annotation by Michelle Graham. TAIR10: Protein kinase family protein with ARM repeat domain | chr1:18607063-18614094 FORWARD LENGTH=1322 SoyBaseE_val: 0ISS
GO:0000087GO-bp Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle SoyBaseN/AISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007000GO-bp Annotation by Michelle Graham. GO Biological Process: nucleolus organization SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009558GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac cellularization SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0051225GO-bp Annotation by Michelle Graham. GO Biological Process: spindle assembly SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009524GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR22983Panther PROTEIN KINASE RELATED JGI ISS
PTHR22983:SF6Panther MAPK KINASE 2-RELATED JGI ISS
UniRef100_B9S1Z3UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S1Z3_RICCO SoyBaseE_val: 0ISS
UniRef100_I1NEC5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEC5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g16822
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g16822 not represented in the dataset
Glyma20g16822 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g16822 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g16822
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g16822
>Glyma20g16822.1   sequence type=CDS   gene model=Glyma20g16822   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCCTCCGAAGTTACTGACTTGATGGCAAAGAGTTTCTCCATCACTAAAATTTTGCTCGATAATGGTGGAAGTTGCACTTCAAGCTCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAACTTCAAATAATGATGCATCTGGAAGAGTTCTGTATGAATCTAGTGCTTGCATTACAGTCATGCTGTCTAGAGTTGCTCAGGTGCTTAGATCATCTCCTAAAATTTCAGGCCAAGAGAAACTGAATGAAACTGCTAACCGAATTTTAGAGCATGCAAAAACAACGGGTTTAGTAGACAATTTGTGTCTGTGTTTAGCCACTTCAGGATCGAGTCTTATTACAGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGTCTGGTGTTTGATTAATGCACTGGATATACTTTTTATGAAGAAAAGTGCCATTCTGTTTCCCATTAATGCTTTACAGAGTCATTCTTTGCATAGGATGGAAGTTGTGCATCATGAGCAAGATCTCTTGGATAAAGCAGATTCAACTAAAGTTGTTGATGCAATGACCAGAGCATTCCTGAGATCTAAAGCTGTTCTGGTTGCTGTTTACTATTGTTTTCACCAACAACTTGAGTCTGCAATGAATTGTGGTCTTCAGCTTTTGTCAAGATGCTGTCTACATAACAGAATTGTTCCTGCTCTCCTTTGTGGTCTTCCCAGTTCCCTTCCCGTGACTACTGTTGTTAGTGGTGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTCTTATCATTATGCAGTTCCCCTGCTAACAAAGACACACAAAGTGTAGAACCAAGTAATGCCAAGTGCAAATTAACAAATCCTTCTGCTCTGGTTCGTCATTCATGTCTCCTTGTTGCAGTAATTGCTCAGTGTTTGAAGTCATCTGGAAGAAATTCAGCAATTTTTATGCTCACTACCTCACCAAAGAAGCAGCTTGCTCGACTATCAGTGTTTGCTCACCAAATTTCTTCTGATGATAAAATAAAAGCCTCTATTGAGCCTCAAAGTGCATCAGCTATGTTGGCTCTGGCATCCATTCTATCCCTTGAATCAGGGGCTTTGGTTGAGTCTCCAATATCTGAAATTGCTTTGCCTTTAATTCCTCGAACTTCTAAACTAAGTGACCATCTTAAATTTTCATCTGGCAATGTAAATGAATCGGACCCTTGCAACATCAGTGGGAAGCTCTCATATTGGCAAGGGGTAAGAGATGGGTGTGTTGGTCTTTTAGATTCCAGACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTACTCCTCTACTTCTTATGGGCCTATTAGGCAATGATGTTTTAAATGCTTCTCATGGAAATGACCATGTAAATGATAGAGTTGGATTGTCTCCTATTGGTGTTGTATGGACAATTTCATCATTATGTCATTGTCTTTCTGGTGGTGCTTTGACTTATCGTCAAATTTTGATTAGGAATGAACATATTAAACTCTTTTCCAACTTGATATGCGACGTTCATATCAATTTGGTAAAATGCTGGATCGGACCTGGTGGAGGGAGAGCAGGAGTCAGAGATCTAATAAATGCAGTGATAGATCTCTTAGCATTTCCTTTTGTTGCTCTGCAAAATGCACCTGGCTTGCCATCAGCCACTGCTTCTGTCAGCAGTGGGTTTCTTCTTAATATTGGCTCTCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATCGAAGAAGACATAGGAAAATATATTAAGATTCTTGTAGAGGTGGGTGTGCCTGGTATTATCCTTCGATGCCTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTTGCTTTTCTGGCTAAAATGGTATGCCACCGACCTTTAGCAATCCAACTTGTTAGTAAAGGTCTTCTGGATCCAAATAAGATGAGAAAGTTGTTTGACTGTTCGGCCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTTGCTCGCATGGACAAGGGATTTTATGAGTACATTAAAGGTGCTTCTGTTTTGGAGTTCTTGAAAGATTTTCTTTTGCATGAGGATCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCACTTGCAAGACATCAAATTGTTGGTATCCTTATTGAAAGATGTTCTGATCCAGACAAACGAACACGGAAATTTGCTTGTTTTGCTATTGGAAACGCGGCCTACCACAATGACTTGTTGTATGAAGAGCTGAGGAAATCTATTCCTCAATTGGCAAATTTGTTACAAATGGCAGAGGAAGACAAGACTAAGGCAAATGCAGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAAGCTTTGTGAAGACATTGTGTCTAACGGAGCGGTTCAGTCTCTGCTGAAACTAATTTCCGATTGTGCGGTATCAGCGCTCAATCCAAGCAGAAATGATTCAGGAAATGAATCTCCTCTAAAGATAGCTCTCTTTTCCCTAGCAAAGATGTGTGCACATCCACTCTGCAGACAGTTCATCCGTTCATCACCATTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCCTCCGCGATCATTAGCAAAGTTGCTGAACCTTGA
Predicted protein sequences of Glyma20g16822
>Glyma20g16822.1   sequence type=predicted peptide   gene model=Glyma20g16822   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSEVTDLMAKSFSITKILLDNGGSCTSSSYLSHWVEFVEIYSQVVTSNNDASGRVLYESSACITVMLSRVAQVLRSSPKISGQEKLNETANRILEHAKTTGLVDNLCLCLATSGSSLITGSSNMLRAASEACRAVWCLINALDILFMKKSAILFPINALQSHSLHRMEVVHHEQDLLDKADSTKVVDAMTRAFLRSKAVLVAVYYCFHQQLESAMNCGLQLLSRCCLHNRIVPALLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSPANKDTQSVEPSNAKCKLTNPSALVRHSCLLVAVIAQCLKSSGRNSAIFMLTTSPKKQLARLSVFAHQISSDDKIKASIEPQSASAMLALASILSLESGALVESPISEIALPLIPRTSKLSDHLKFSSGNVNESDPCNISGKLSYWQGVRDGCVGLLDSRLKWGGPLAVQQLCASGTPLLLMGLLGNDVLNASHGNDHVNDRVGLSPIGVVWTISSLCHCLSGGALTYRQILIRNEHIKLFSNLICDVHINLVKCWIGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNIGSPGQRVCMEDKGIVKAIEEDIGKYIKILVEVGVPGIILRCLDHMDLNDLGRPVAFLAKMVCHRPLAIQLVSKGLLDPNKMRKLFDCSAPKEVTLDALMIISDLARMDKGFYEYIKGASVLEFLKDFLLHEDPNMRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRKSIPQLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSNGAVQSLLKLISDCAVSALNPSRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASAIISKVAEP*






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