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Report for Sequence Feature Glyma20g16736

Feature Type:gene_model
Chromosome:Gm20
Start:23406763
stop:23410288
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g16736
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35160AT Annotation by Michelle Graham. TAIR10: SU(VAR)3-9 homolog 5 | chr2:14823562-14825946 FORWARD LENGTH=794 SoyBaseE_val: 2.00E-110ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010216GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of DNA methylation SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0040029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0018024GO-mf Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity SoyBaseN/AISS
GO:0042054GO-mf Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity SoyBaseN/AISS
GO:0042393GO-mf Annotation by Michelle Graham. GO Molecular Function: histone binding SoyBaseN/AISS
KOG1082 KOG Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing JGI ISS
PTHR22884Panther SET DOMAIN PROTEINS JGI ISS
PTHR22884:SF114Panther SUBFAMILY NOT NAMED JGI ISS
PF00856PFAM SET domain JGI ISS
PF02182PFAM YDG/SRA domain JGI ISS
PF05033PFAM Pre-SET motif JGI ISS
UniRef100_B9N2W3UniRef Annotation by Michelle Graham. Most informative UniRef hit: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9N2W3_POPTR SoyBaseE_val: 3.00E-121ISS
UniRef100_UPI000233DCCAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DCCA related cluster n=1 Tax=unknown RepID=UPI000233DCCA SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g16736
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g16736 not represented in the dataset
Glyma20g16736 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g16736 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g069300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g16736
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g16736
>Glyma20g16736.1   sequence type=CDS   gene model=Glyma20g16736   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATTCAAAGTCTTCTGGGAGAAGGCATGAAGAATGGTCTCCTACCCCTTTGTCTGACAAGAAAAGGATGGAAGTGTCTGTAAAACACAGGAAGGTCAAACAAGCATTGGCGACGTTTAGAAACTTAGTTGACAAGCTCAATCATCAGTATAAAGCGTCTCAACCTGTGAATTTAATGGCGAAGACTAAAGCTATGATGGAAGCAGCAATGATGATGAGACAAAAGCATCAATGGGAGAACGATAAAAAGCATGTGGGACATGTAGTAGGCATCGAGGTAGGTGACATCTTTCAAAGTAGGGTGGAACTCAATGTCATTGGCCTCCATCGGCAGTTTTGGAATGGTATTGATTATATGGGAACAGGCAAGAACTCGTTGGCCACAAGCATTGTTGTAACCAATCGATACGATAATGCTAGGAAATCCAATGGTACCTTGGTTTACAGTGGTCATGGAGGAAATCCCAATGTTAAGAGTAATGTTTCTATTCAGGATCAGAAGTTGCAAGGGGGAAATTTGGCTCTGAAGAATAGCATGGATACAAAAAGTCCTGTGAGGGTTATACTGAAATTTTGTAAAAAGTTTGAAGTTGGCAGCAATTTCGATTACTTGTATGTTTATGATGGCTTGTATTTAGTGGATAAGATGACTGAAGAAAGAGGGAAACTTGGAAAACTTGTGTTCAAGTTTACACTGAATAGGATTTCAGAGCAACCCCAAAGTTGTGTTGCCCTCAAAGATGATGTTATGGGCAATGATGACAGTTCAAGACAACTTGCAAGTTCTAGGCCAAGAAACAGACACAAATCCAGAGGAAGTGTAGTCCAAAAGGATGTTGTTCGAGTTAACGATCTTTCAAAAGGAAAAGAAAAATTTCCTATTCGGGTGGTGACATTAACAAATTGTGTTCATATACCCAAATCCTTTTACTACATTGTTAAGAGCATCTATTCAGATAAGTTCAACCAGGCAACGATTCCGTGTGGCTGTGATTGTGAAGATGGATGTGTGAACTGTGACAAATGTGTTTGCATTATTAAGAATGGTGGGATAATGGCATATGATTGTAAAAAAAGACTTGCTTCTCCCATGGGATCATTGCTTATTTATGAATGTGGCCCTTCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAAGCCAGCATGGGATCCAGTTCCAACTGGAAATCTTCATGACAGAATTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCGGGACAGTAGACAAAGTGGATTGAGTATAGATGTTGATGATGACTATTTATTTCACACGGGTGTTGGAAAGGGCTTCATCGATGCAACAAAATGTGGAAACATTGGAAGATTTATAAATCATAGCTGTTCTCCGAATCTCCATGTCAAAGATGTTATGTATGATCATGATGACAAGAATCTTCCTCACAAAATGCTGTTTGCTGCAAAGGACATTCCTGCTGGTAGAGAGCTGAGTTTTGATTATAATTCCAAGGGAAAATTTATCAACGATAGGAGTAATAGCTGCTACTGTGGATCACAGGAATGCAATGGTCAGATCTATATTAAAGTTAAACAAAATGACAGGCTGACTGAGGAATTTGGAAGCTTCTAA
Predicted protein sequences of Glyma20g16736
>Glyma20g16736.1   sequence type=predicted peptide   gene model=Glyma20g16736   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSKSSGRRHEEWSPTPLSDKKRMEVSVKHRKVKQALATFRNLVDKLNHQYKASQPVNLMAKTKAMMEAAMMMRQKHQWENDKKHVGHVVGIEVGDIFQSRVELNVIGLHRQFWNGIDYMGTGKNSLATSIVVTNRYDNARKSNGTLVYSGHGGNPNVKSNVSIQDQKLQGGNLALKNSMDTKSPVRVILKFCKKFEVGSNFDYLYVYDGLYLVDKMTEERGKLGKLVFKFTLNRISEQPQSCVALKDDVMGNDDSSRQLASSRPRNRHKSRGSVVQKDVVRVNDLSKGKEKFPIRVVTLTNCVHIPKSFYYIVKSIYSDKFNQATIPCGCDCEDGCVNCDKCVCIIKNGGIMAYDCKKRLASPMGSLLIYECGPSCKCSSSCINRVSQHGIQFQLEIFMTELKGWGVRTRSFIPSGSFVCEYIGEVRDSRQSGLSIDVDDDYLFHTGVGKGFIDATKCGNIGRFINHSCSPNLHVKDVMYDHDDKNLPHKMLFAAKDIPAGRELSFDYNSKGKFINDRSNSCYCGSQECNGQIYIKVKQNDRLTEEFGSF*






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