Glyma20g16630 - SoyBase

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Report for Sequence Feature Glyma20g16630

Feature Type:	gene_model
Chromosome:	Gm20
Start:	23273584
stop:	23275290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38090	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr2:15945278-15946775 FORWARD LENGTH=298	SoyBase	E_val: 4.00E-74	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_I1NEC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEC0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB57 n=1 Tax=Glycine max RepID=Q0PJL5_SOYBN	SoyBase	E_val: 3.00E-170	ISS

Expression Patterns of Glyma20g16630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g16630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g068700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16630

Limit To All Plant Sequences

>Glyma20g16630.2   sequence type=CDS   gene model=Glyma20g16630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGGGAAAGTATAACCCTCTCTTCTCCTACACCTTGCACTCCAAACTCCAACACCAATTGGTTGGTGATGGAGGATAATAATAGAAGCAGCACAAAATGGACCTCTGAAGACAAGAAGCTCTTTGAAAATGCTCTTGCAGTGCATGATAAGGACACCCCAGATCAGTGGCACAAAGTGGCTAAGATGATTCTCGGAAAGATAGTGGTTGATGTGATAAGGAAGTACAAGGAGTTGGAAGTAGATATTAGCAATATAGAAACTGTTTTGATTCCAGTTCCTGGCTATAGTAGCATTGCTACCTCACCTTTCACCTTAGATTGGGTGAACACTCATGGGTATGATGGGTTTAAAGGATATGGAAAGAGATCTTCCTCACTGAGACCAATTGAGCATGAAAGGAAGAAAGGAGTGCCTAGGACTGAAGATGAACATAAAACTGGTGGATGGAGTTTAAAGTTAATAGGTGTATGGACAAGAATTCTATATTTGGAGTTTGAACTTCCCTTTAATGTTCCCTGCATATTGTTTCTATTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGACAAATATATGTTGCAATTTTGTTATTACAAGAACTCCAACACAGGTTGGTAGTCATGCTCAGAAGTACTTCATAAGGCAGCTTTCAGGAGGCAAAGACAAAAGCAGGGCAAGCATACATGACAAAACAACAGTGAATCTCACAGAAACCATAACAACTTCTTCAGAAGACACCAATAGATCCACTTCACCACATGTGCTCTCAAGCAACAACAGCCAAATTCTACTCCTACTACACCAAGAACTCGTTTTCAATGGAGTAGCCTTTGATTCGAATTTTGCTCCTTGTCTAGTTGTAGCCTTGTTCATAACATTAGCTATGACTCTCAACCCTGGTCATGAAAGAATCTTCATGTCTCATTATGGTGCTAACTCCTTTGGGGTTAAAATTGAGGGACAGAATATTCATGAGTCTTCTTACTTGGGACCTCAGACACAAAACATGGTTTTCCAAATGCAACAGTCCTCTCAACACTAG

Predicted protein sequences of Glyma20g16630

Limit To All Plant Sequences

>Glyma20g16630.2   sequence type=predicted peptide   gene model=Glyma20g16630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKWESITLSSPTPCTPNSNTNWLVMEDNNRSSTKWTSEDKKLFENALAVHDKDTPDQWHKVAKMILGKIVVDVIRKYKELEVDISNIETVLIPVPGYSSIATSPFTLDWVNTHGYDGFKGYGKRSSSLRPIEHERKKGVPRTEDEHKTGGWSLKLIGVWTRILYLEFELPFNVPCILFLLGLKKYGKGDWTNICCNFVITRTPTQVGSHAQKYFIRQLSGGKDKSRASIHDKTTVNLTETITTSSEDTNRSTSPHVLSSNNSQILLLLHQELVFNGVAFDSNFAPCLVVALFITLAMTLNPGHERIFMSHYGANSFGVKIEGQNIHESSYLGPQTQNMVFQMQQSSQH*

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