Report for Sequence Feature Glyma20g16600
Feature Type: gene_model
Chromosome: Gm20
Start: 23186893
stop: 23190445
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g16600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24120 AT
Annotation by Michelle Graham. TAIR10: YELLOW STRIPE like 1 | chr4:12524581-12527023 FORWARD LENGTH=673
SoyBase E_val: 0 ISS
GO:0003006 GO-bp
Annotation by Michelle Graham. GO Biological Process: developmental process involved in reproduction
SoyBase N/A ISS
GO:0006857 GO-bp
Annotation by Michelle Graham. GO Biological Process: oligopeptide transport
SoyBase N/A ISS
GO:0010039 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to iron ion
SoyBase N/A ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0051980 GO-mf
Annotation by Michelle Graham. GO Molecular Function: iron-nicotianamine transmembrane transporter activity
SoyBase N/A ISS
PF03169 PFAM
OPT oligopeptide transporter protein
JGI ISS
UniRef100_B9RYT4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9RYT4_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233DCC7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DCC7 related cluster n=1 Tax=unknown RepID=UPI000233DCC7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g16600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g16600
Paralog Evidence Comments
Glyma13g10410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g16600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g068300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g16600
Coding sequences of Glyma20g16600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g16600.1 sequence type=CDS gene model=Glyma20g16600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGTCCTCACCAGCTAATTTGAACACGGGGGGAGAAGAGAAGAAATTAGAAATAGAGAAAGTGGTAGAGAGTCAGGTAGAGGTAGCAGATACCGAGTCAAAGAGAATTCAGCCATGGAAAGAGCAAATAACAGTGAGAGGATTGGTGGTGAGCACGGTGCTTGGAATCATATACAGCATAATAGCCATGAAGCTCAATCTCTCAGCTGGAATCGTTCCTAACTTTAATGTCTCTGCTGCCCTTCTTGCTTTCTTGTTTGTCCGAAGCTGGAACAAAGTGCTCCACAAGGCTGGTTTTATCTCCAAACCCTTCACCCGCCAAGAAAACACCATCATACAGACTTGTGTTGTCTCATGCTATAGCATTGCTGTTCATGGAGGATTTGCTTCTTATCTTTTGGGATTAAACAGGAAGACGTATGAGTTGTCTGGAGTTGGGACTGAGGGTAACAATCCAAATACTGTTAGAGATCCTGGATTTGCTTGGATGACTACCTTCCTTTTTGTGGTTTGCTTTGTTGGTCTCTTCATCTTGATTCCACTCAGAAAGATCATGATAGTTGACCTGAAGTTGACGTTTCCTAGTGGCTTGGCAACAGCTGTTCTCATCAATGGTTTCCACACGCAGGGGGACAAAATGGCCAAGAAGCAAGTTGGTGGGTTCTTGAAGTATTTTTCCATCAGTTTCATGTGGGGTTTTTTCAAGTGGTTCTTCTCAGGGACACAGGATTGCGGATTCGCTCAGTTTCCTACCTTTGGATTGCAAGCTTGGAAGCAAACATTCTATTTTGATTTTAACATGACTTATGTGGGAGCAGGGATGATTTGCCCCCACCTTGTAAATTTGTCTTTGCTCCTTGGAGCCATTCTCTCCTTTGGAGTGATATGGCCGCTCATTGATCGTCGCAAGGGAGATTGGTTCCCTACCAATTTAGATGAGAGCAACATGAAAGCTTTGTACGGCTACAAGGTCTTTCTAACAGTTGCTCTCATCCTCGGTGATGGCTTATACAACTTTGTCAAGATTTTAGTTTCCTCAATCCTTAGCGTACATGAAAAAATTAAGAACCGTAAAAATGCTTCAAGTGCGGATCAACAGAGAGATAACGCTGAAGAGCTTAAACAAAAAGAAGTTTTCCTGAGGGACAACATTTCGATGTGGATCGGAACCGGCGGATACATAGTTTTGTCGGTGATTTCCATAATTGTAATCCCTTTAATGTTTCCTCAGCTGAAGTGGTTCTACGTGGTGGTCGCTTACATCTTAGCCCCGTCCCTGGCATTCTGTAACGCTTACGGAACGGGTCTCACCGACATGAACATGGCATACAATTACGGCAAAGTGGCACTCTTTGTTGTTGCAGCTATGAGCGGGAGAGACAACGGCGTAGTGGCAGGTCTCGTAGGGTGTGGTCTGGTTAAATCTGTTGTCTCTGTGGCTTGCACTCTGATGCACGATTTCAAAACTGCATATTACACCTGCACTTCTCCTAAAGCAATGTTCATATGCCAATTAATCGGCACTGCGTTGGGCTGCGTAATAGCTCCCCTCAGCTTCTTTCTGTTCTACAAGGCATTCGATGTGGGGAACCCGCATGGGGAATTCAAGGCCCCCTATGCGCTAATTTACAGAAACATGGCGGTTTTAGGCGTCGAAGGTTTCTCCGCACTGCCCCAGCATTGCTTGCAGCTCTGTTACGGGTTCTTTGCTTTCGCGGTGGTGGTGAACATGGTGAGAGACCTCTCCCCCAACGTGTTTGGGAAATGGATGCCGTTGCCCATGGTGATGGCGATTCCCTTTCTGGTTGGTGCCTACTTTGCCATTGATATGTGCCTTGGGAGTTTGGTGGTTTACGTGTGGCACAAGCTTAACACTAAGAAGGCAGAGGCCATGATTCCAGCAACTGCCTCTGGACTCATTTGTGGAGAAGGCCTGTGGGCTCTTCCCGCTTCCATTCTTGCTCTTGCCAAAGTTAACCCGCCTATCTGCATGAATTTTCTTGCTTCCTAG
Predicted protein sequences of Glyma20g16600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g16600.1 sequence type=predicted peptide gene model=Glyma20g16600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMSSPANLNTGGEEKKLEIEKVVESQVEVADTESKRIQPWKEQITVRGLVVSTVLGIIYSIIAMKLNLSAGIVPNFNVSAALLAFLFVRSWNKVLHKAGFISKPFTRQENTIIQTCVVSCYSIAVHGGFASYLLGLNRKTYELSGVGTEGNNPNTVRDPGFAWMTTFLFVVCFVGLFILIPLRKIMIVDLKLTFPSGLATAVLINGFHTQGDKMAKKQVGGFLKYFSISFMWGFFKWFFSGTQDCGFAQFPTFGLQAWKQTFYFDFNMTYVGAGMICPHLVNLSLLLGAILSFGVIWPLIDRRKGDWFPTNLDESNMKALYGYKVFLTVALILGDGLYNFVKILVSSILSVHEKIKNRKNASSADQQRDNAEELKQKEVFLRDNISMWIGTGGYIVLSVISIIVIPLMFPQLKWFYVVVAYILAPSLAFCNAYGTGLTDMNMAYNYGKVALFVVAAMSGRDNGVVAGLVGCGLVKSVVSVACTLMHDFKTAYYTCTSPKAMFICQLIGTALGCVIAPLSFFLFYKAFDVGNPHGEFKAPYALIYRNMAVLGVEGFSALPQHCLQLCYGFFAFAVVVNMVRDLSPNVFGKWMPLPMVMAIPFLVGAYFAIDMCLGSLVVYVWHKLNTKKAEAMIPATASGLICGEGLWALPASILALAKVNPPICMNFLAS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
