Glyma20g16540 - SoyBase

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Report for Sequence Feature Glyma20g16540

Feature Type:	gene_model
Chromosome:	Gm20
Start:	23073736
stop:	23075109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59720	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:21939868-21941784 REVERSE LENGTH=638	SoyBase	E_val: 2.00E-67	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004519	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endonuclease activity	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7IYD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IYD6_MEDTR	SoyBase	E_val: 2.00E-161	ISS
UniRef100_I1NEB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g16540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16540

Paralog	Evidence	Comments
Glyma13g10430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g068100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16540

Limit To All Plant Sequences

>Glyma20g16540.2   sequence type=CDS   gene model=Glyma20g16540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCACAAAGACGCAGCGTTATGGAAGGCCCAACAATGCCTTTTGACCCATTTCAAGCAGTGTTCGAGCATGAAGCATTTGAAGGAGATGCACGCTCGTGTAGTCCAGAGTGGGTTCGATAAGACCCCGCTCGTAGTGGGAAAGATCATTGAGTTTTGCATGGTTTCGGGGCACGGAGACATGACTTACGCTGTGAGGGTTTTTGACAGAATTGACAAACCCGGTGCTTTTATGTGGAACACCATGATCAGGGGCTTTGGGAAGACTCACCAACCAGATAAGGCCATTGATTTCAACTGCATTGCACCATCCTTAAACTTGGACTCGAAACTCATGCATATGTATGGAATGGTGAAGGACATAGAAACTGCACACCACCTGTTTGAGGAAATTCCAAATGAAGATTTAGTGGCTTGGAACTCTATCATAGACTGTCATATGCATTGTGGAAACTATAAACAAGCTCACCATCTGTTTTGCAGAATGGTGCAGAATGGATTGCAGCCCAATGACGCCACTCTGGTGGTGACCCTCTCGGCGTGTGGTGCAATAGGAGCCCTGGACTTTGGGAGGCGAATTCATTCTTCTCTCATACAACAGCATACCAAGCTTGGCGAGAGTACATCGGTCTCAAATTCCATAATTGACATGTATGCAAATATGAAAGGGAAGAATCTGATTTCGTGGAATGTCATGATTATCAGGCTGGCATCGCATGGTAATGGAGAAGAGGCGTTAGCGATTTTTGCAAAGATGTTACAGCAGAATGTGGAGAGACCGAATGATGTTACATTCTTGGGGATGTTAAGTGCTTGTAGCCATGGAGGATTGGTTGATAAAAGTAGACGATGTATTGATATTATGGGCATTGACTATAACATCCAATCCACAATAAAGCACTATGGGTGCGTGGTGGACCTTTTGGGTCGAGCTGGTTTAATTGAAGATGCATATAATTTGATAATGAACATGCCAGTTGAGTGCAATGCAGTTGTGAGGAAATATCTGTTGGAATTAGAACCGGAGCATAACAGTAACTATGTTCTTGTTGCAAACATGTATGCAAGTACCGGTCAATGGAAAGAAATGAGCAAAGAAAGAAGATCAATGCAGCAAAGGAGAGTTCAGAAACCAGAGCCTGCAAATAGCTTCATCGGAGTTACTTAA

Predicted protein sequences of Glyma20g16540

Limit To All Plant Sequences

>Glyma20g16540.2   sequence type=predicted peptide   gene model=Glyma20g16540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHKDAALWKAQQCLLTHFKQCSSMKHLKEMHARVVQSGFDKTPLVVGKIIEFCMVSGHGDMTYAVRVFDRIDKPGAFMWNTMIRGFGKTHQPDKAIDFNCIAPSLNLDSKLMHMYGMVKDIETAHHLFEEIPNEDLVAWNSIIDCHMHCGNYKQAHHLFCRMVQNGLQPNDATLVVTLSACGAIGALDFGRRIHSSLIQQHTKLGESTSVSNSIIDMYANMKGKNLISWNVMIIRLASHGNGEEALAIFAKMLQQNVERPNDVTFLGMLSACSHGGLVDKSRRCIDIMGIDYNIQSTIKHYGCVVDLLGRAGLIEDAYNLIMNMPVECNAVVRKYLLELEPEHNSNYVLVANMYASTGQWKEMSKERRSMQQRRVQKPEPANSFIGVT*

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