SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10770 | AT | Annotation by Michelle Graham. TAIR10: oligopeptide transporter 7 | chr4:6628646-6632517 REVERSE LENGTH=766 | SoyBase | E_val: 0 | ISS |
| GO:0006857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligopeptide transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG2262 | KOG | Sexual differentiation process protein ISP4 | JGI | ISS | |
| PTHR22601 | Panther | ISP4 LIKE PROTEIN | JGI | ISS | |
| PF03169 | PFAM | OPT oligopeptide transporter protein | JGI | ISS | |
| UniRef100_G7J807 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptide transporter n=1 Tax=Medicago truncatula RepID=G7J807_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0000D89695 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0000D89695 related cluster n=1 Tax=unknown RepID=UPI0000D89695 | SoyBase | E_val: 0 | ISS |
|
Glyma20g16480 not represented in the dataset |
Glyma20g16480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g067300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g16480.1 sequence type=CDS gene model=Glyma20g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGGAAGAATCCTCGGTACACGAGATCAAAACCCCTCTCCTGTCATCTAACAAGGAGGAAGATGAAGTTGGAAGCAGTACTAGCCATAGGCAGCAAAATGAAGAGAACTCGCCCATAAAACAAGTGGCCCTAACGGTGCCAACCACCGATGACCCATCTCTTCCAGTTCTGACGTTCCGAATGTGGGTGTTGGGAACTCTATCATGCGTGCTGCTGTCGTTCCTGAACCAGTTCTTCTGGTACCGCATCCAGCCTCTCACCATCACCGCGATCTCCGCCCAGATCGCGGTGGTGCCGCTCGGCCAACTCATGGCCGCAACGATCACTAAGCGCGTGTTCTTCAGAGGAACACGCTGGGAATTCACTCTCAATCCGGGACCCTTCAACGTCAAGGAGCACGTTCTCATCACCATCTTCGCCAACTCCGGCGCCGGCACCGTCTACGCCATCCACGTTGTTACCGCTGTCAAAATCTTTTACCACAAACACATCTCCTTCTTTGTCTCCTTGCTTGTGGTCATCACCACACAGGTATTGGGTTTCGGATGGGCTGGCATATTTAGAAGATACCTGGTAGAGCCAGCGGCAATGTGGTGGCCAGCAAATTTAGTTCAAGTTTCACTCTTCAGGGCCCTGCACGAGAAGGATGAGCGACCAAAGGGAGGGTTAACGCGATCGCAGTTCTTCGTAATCGCATTTTTGTGCAGCTTCGCCTATTACGTGTTCCCCGGTTACATTTTCCAAATGCTAACCTCCCTCTCTTGGATTTGCTGGTTATATCCCAACAATGTTCTGGCCCAACAACTTGGGTCGGGCCTAAACGGGCTTGGCATAGGAGCAATTGGGCTTGACTGGTCCACCATTTCGTCCTACCTCGGAAGCCCACTCGCAAGCCCATGGTTTGCCACTGCCAATGTCGCGGTGGGTTTCGTGTTTGTGATGTACGTTCTGACTCCGCTGTGCTATTGGCTCGACTTGTACAACGCCAAAACCTTCCCCATTTTCTCGGACGAACTCTTCACGGAGAAAGGTCAAGTTTATAACATCACAGCCATAATAGACTCCAATTTCCACCTAGACCTTGCGGCTTATGAGAGACAAGGTAGATTGTACATCAGCACTTTCTTTGCCATGACCTATGGTGTTGGCTTTGCTGCACTCACCGCCACCATTATGCATGTTGCTCTCTTTCACGGAAGAGAAATATGGGAGCAAAGTAAATCAAGTTTTAAGGAAAAGAGCGTGGACATTCACACGAAGCTTATGCGGAGGTACAAACAGGTGCCTGAATGGTGGTTCGTGTGCATACTCATGGCAACCATTGCAGCCACCGTCTTCACCTGCGAATACTACAACGATCAGCTGCAACTGCCTTGGTGGGGTGTTCTCCTCGCATGTGCCATTGCTATATTCTTCACTCTCCCCATTGGAATTATTACTGCAATCACAAATCAGAGTCCGGGGTTGAACATAATCACGGAATACATCATAGGGTACATCTACCCGGGATACCCTGTGGCAAACATGTGCTTCAAGGTTTATGGTTACATCAGCATGACGCAGGCCATCACTTTCTTGCAAGACTTCAAGCTTGGTCACTACATGAAAATCCCTCCCAGAACCATGTTCATGGGACAGGTTGTGGGAACGCTTGTCGCGGGTTTTGTGTATTTGGGCACTGCGTGGTGGTTAATGGAAACGATCCCAGACATATGCAAAGACACGTCCTCTGTATGGACGTGTCCAAGTGACACAGTGTTCTACGACGCATCGGTTATTTGGGGTTTGATTGGGCCGAGAAGAATATTCGGAGACCTGGGAACGTACGAGAAAGTGAATTGGTTCTTCCTAGGAGGAGCCATTGCTCCATTACTGGTTTGGTTGGCGGCAAGGTCGTTCCCACAACAAGAGTGGATTAGGCTCATAAACATGCCAGTGTTGATAGGGGCCACCGGAATGATGCCTCCGGCGACGGCGGTGAATTACACGAGCTGGATCATTGCGGGGTTTCTCTCTGGCTTCGTTGTGTTCAGATACAAGCCCGAATGGTGGAAGCGTCACAATTATGTGCTCTCAGGGGCACTTGATGCAGGGCTTGCCTTCATGGGGGTGCTTTTGTATCTATGCCTTGGATTGGAGGACATTAGTCTCAATTGGTGGGGGAATGACCTTGACGGATGTACATTGGCTCACTGCCCCACCGCCAAAGTAGTCGAGGTTCAAGGTTGTGCCGTTTTCACTTGA
>Glyma20g16480.1 sequence type=predicted peptide gene model=Glyma20g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMEESSVHEIKTPLLSSNKEEDEVGSSTSHRQQNEENSPIKQVALTVPTTDDPSLPVLTFRMWVLGTLSCVLLSFLNQFFWYRIQPLTITAISAQIAVVPLGQLMAATITKRVFFRGTRWEFTLNPGPFNVKEHVLITIFANSGAGTVYAIHVVTAVKIFYHKHISFFVSLLVVITTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALHEKDERPKGGLTRSQFFVIAFLCSFAYYVFPGYIFQMLTSLSWICWLYPNNVLAQQLGSGLNGLGIGAIGLDWSTISSYLGSPLASPWFATANVAVGFVFVMYVLTPLCYWLDLYNAKTFPIFSDELFTEKGQVYNITAIIDSNFHLDLAAYERQGRLYISTFFAMTYGVGFAALTATIMHVALFHGREIWEQSKSSFKEKSVDIHTKLMRRYKQVPEWWFVCILMATIAATVFTCEYYNDQLQLPWWGVLLACAIAIFFTLPIGIITAITNQSPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMTQAITFLQDFKLGHYMKIPPRTMFMGQVVGTLVAGFVYLGTAWWLMETIPDICKDTSSVWTCPSDTVFYDASVIWGLIGPRRIFGDLGTYEKVNWFFLGGAIAPLLVWLAARSFPQQEWIRLINMPVLIGATGMMPPATAVNYTSWIIAGFLSGFVVFRYKPEWWKRHNYVLSGALDAGLAFMGVLLYLCLGLEDISLNWWGNDLDGCTLAHCPTAKVVEVQGCAVFT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
