Glyma20g16480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g16480

Feature Type:	gene_model
Chromosome:	Gm20
Start:	22959781
stop:	22964408
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10770	AT	Annotation by Michelle Graham. TAIR10: oligopeptide transporter 7 \| chr4:6628646-6632517 REVERSE LENGTH=766	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG2262	KOG	Sexual differentiation process protein ISP4	JGI		ISS
PTHR22601	Panther	ISP4 LIKE PROTEIN	JGI		ISS
PF03169	PFAM	OPT oligopeptide transporter protein	JGI		ISS
UniRef100_G7J807	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptide transporter n=1 Tax=Medicago truncatula RepID=G7J807_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0000D89695	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000D89695 related cluster n=1 Tax=unknown RepID=UPI0000D89695	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g16480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g16480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g067300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16480

Limit To All Plant Sequences

>Glyma20g16480.1   sequence type=CDS   gene model=Glyma20g16480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGGAAGAATCCTCGGTACACGAGATCAAAACCCCTCTCCTGTCATCTAACAAGGAGGAAGATGAAGTTGGAAGCAGTACTAGCCATAGGCAGCAAAATGAAGAGAACTCGCCCATAAAACAAGTGGCCCTAACGGTGCCAACCACCGATGACCCATCTCTTCCAGTTCTGACGTTCCGAATGTGGGTGTTGGGAACTCTATCATGCGTGCTGCTGTCGTTCCTGAACCAGTTCTTCTGGTACCGCATCCAGCCTCTCACCATCACCGCGATCTCCGCCCAGATCGCGGTGGTGCCGCTCGGCCAACTCATGGCCGCAACGATCACTAAGCGCGTGTTCTTCAGAGGAACACGCTGGGAATTCACTCTCAATCCGGGACCCTTCAACGTCAAGGAGCACGTTCTCATCACCATCTTCGCCAACTCCGGCGCCGGCACCGTCTACGCCATCCACGTTGTTACCGCTGTCAAAATCTTTTACCACAAACACATCTCCTTCTTTGTCTCCTTGCTTGTGGTCATCACCACACAGGTATTGGGTTTCGGATGGGCTGGCATATTTAGAAGATACCTGGTAGAGCCAGCGGCAATGTGGTGGCCAGCAAATTTAGTTCAAGTTTCACTCTTCAGGGCCCTGCACGAGAAGGATGAGCGACCAAAGGGAGGGTTAACGCGATCGCAGTTCTTCGTAATCGCATTTTTGTGCAGCTTCGCCTATTACGTGTTCCCCGGTTACATTTTCCAAATGCTAACCTCCCTCTCTTGGATTTGCTGGTTATATCCCAACAATGTTCTGGCCCAACAACTTGGGTCGGGCCTAAACGGGCTTGGCATAGGAGCAATTGGGCTTGACTGGTCCACCATTTCGTCCTACCTCGGAAGCCCACTCGCAAGCCCATGGTTTGCCACTGCCAATGTCGCGGTGGGTTTCGTGTTTGTGATGTACGTTCTGACTCCGCTGTGCTATTGGCTCGACTTGTACAACGCCAAAACCTTCCCCATTTTCTCGGACGAACTCTTCACGGAGAAAGGTCAAGTTTATAACATCACAGCCATAATAGACTCCAATTTCCACCTAGACCTTGCGGCTTATGAGAGACAAGGTAGATTGTACATCAGCACTTTCTTTGCCATGACCTATGGTGTTGGCTTTGCTGCACTCACCGCCACCATTATGCATGTTGCTCTCTTTCACGGAAGAGAAATATGGGAGCAAAGTAAATCAAGTTTTAAGGAAAAGAGCGTGGACATTCACACGAAGCTTATGCGGAGGTACAAACAGGTGCCTGAATGGTGGTTCGTGTGCATACTCATGGCAACCATTGCAGCCACCGTCTTCACCTGCGAATACTACAACGATCAGCTGCAACTGCCTTGGTGGGGTGTTCTCCTCGCATGTGCCATTGCTATATTCTTCACTCTCCCCATTGGAATTATTACTGCAATCACAAATCAGAGTCCGGGGTTGAACATAATCACGGAATACATCATAGGGTACATCTACCCGGGATACCCTGTGGCAAACATGTGCTTCAAGGTTTATGGTTACATCAGCATGACGCAGGCCATCACTTTCTTGCAAGACTTCAAGCTTGGTCACTACATGAAAATCCCTCCCAGAACCATGTTCATGGGACAGGTTGTGGGAACGCTTGTCGCGGGTTTTGTGTATTTGGGCACTGCGTGGTGGTTAATGGAAACGATCCCAGACATATGCAAAGACACGTCCTCTGTATGGACGTGTCCAAGTGACACAGTGTTCTACGACGCATCGGTTATTTGGGGTTTGATTGGGCCGAGAAGAATATTCGGAGACCTGGGAACGTACGAGAAAGTGAATTGGTTCTTCCTAGGAGGAGCCATTGCTCCATTACTGGTTTGGTTGGCGGCAAGGTCGTTCCCACAACAAGAGTGGATTAGGCTCATAAACATGCCAGTGTTGATAGGGGCCACCGGAATGATGCCTCCGGCGACGGCGGTGAATTACACGAGCTGGATCATTGCGGGGTTTCTCTCTGGCTTCGTTGTGTTCAGATACAAGCCCGAATGGTGGAAGCGTCACAATTATGTGCTCTCAGGGGCACTTGATGCAGGGCTTGCCTTCATGGGGGTGCTTTTGTATCTATGCCTTGGATTGGAGGACATTAGTCTCAATTGGTGGGGGAATGACCTTGACGGATGTACATTGGCTCACTGCCCCACCGCCAAAGTAGTCGAGGTTCAAGGTTGTGCCGTTTTCACTTGA

Predicted protein sequences of Glyma20g16480

Limit To All Plant Sequences

>Glyma20g16480.1   sequence type=predicted peptide   gene model=Glyma20g16480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMEESSVHEIKTPLLSSNKEEDEVGSSTSHRQQNEENSPIKQVALTVPTTDDPSLPVLTFRMWVLGTLSCVLLSFLNQFFWYRIQPLTITAISAQIAVVPLGQLMAATITKRVFFRGTRWEFTLNPGPFNVKEHVLITIFANSGAGTVYAIHVVTAVKIFYHKHISFFVSLLVVITTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALHEKDERPKGGLTRSQFFVIAFLCSFAYYVFPGYIFQMLTSLSWICWLYPNNVLAQQLGSGLNGLGIGAIGLDWSTISSYLGSPLASPWFATANVAVGFVFVMYVLTPLCYWLDLYNAKTFPIFSDELFTEKGQVYNITAIIDSNFHLDLAAYERQGRLYISTFFAMTYGVGFAALTATIMHVALFHGREIWEQSKSSFKEKSVDIHTKLMRRYKQVPEWWFVCILMATIAATVFTCEYYNDQLQLPWWGVLLACAIAIFFTLPIGIITAITNQSPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMTQAITFLQDFKLGHYMKIPPRTMFMGQVVGTLVAGFVYLGTAWWLMETIPDICKDTSSVWTCPSDTVFYDASVIWGLIGPRRIFGDLGTYEKVNWFFLGGAIAPLLVWLAARSFPQQEWIRLINMPVLIGATGMMPPATAVNYTSWIIAGFLSGFVVFRYKPEWWKRHNYVLSGALDAGLAFMGVLLYLCLGLEDISLNWWGNDLDGCTLAHCPTAKVVEVQGCAVFT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain