Report for Sequence Feature Glyma20g16230
Feature Type: gene_model
Chromosome: Gm20
Start: 22605183
stop: 22612063
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g16230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G22120 AT
Annotation by Michelle Graham. TAIR10: ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771
SoyBase E_val: 0 ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG1134
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13018 Panther
PROBABLE MEMBRANE PROTEIN DUF221-RELATED
JGI ISS
PTHR13018:SF5 Panther
RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN
JGI ISS
PF02714 PFAM
Domain of unknown function DUF221
JGI ISS
UniRef100_G7KK36 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7KK36_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233D93E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D93E related cluster n=1 Tax=unknown RepID=UPI000233D93E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g16230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g16230
Paralog Evidence Comments
Glyma13g10490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g16230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g066800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g16230
Coding sequences of Glyma20g16230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g16230.4 sequence type=CDS gene model=Glyma20g16230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAACGCTGTCGGATATTGGAGTTGCTGCTGCCATAAACATTTCCACTGCATTGCTTTTCTTTGTGGCATTTGCTATTTTGAGGCTTCAGCCTTGGAACGATCGAGTATACTTTCCAAAATGGTATTTGAAGGGTTTAAGAACAGATCCAGTTCATGGAAGAGCGCTTGTGAGCAAGTTCATCAATTTAGACTGGAGAGCATATCTTAGCTTTTTGAATTGGATGCCAGAAGCACTTAGAATGCCAGAACCTGAGCTTATTGACCATGCTGGATTGGATTCTGTTGTTTACCTGCGGATTTACTTGATAGGGCTTAAAATCTTTATTCCTATTGCATTCCTGGCTTGGATTGTTCTGGTTCCTGTCAATTGGACAAGTACTGGTCTAGAAGGATCCCAGATAAAAAACATAACTTCCAGCAACATTGATAAACTCTCGGTTTCAAATGTCCATAGAGGATCTGAAAGGTTTTGGGGACACATAGTAATGGCTTATGCGTTTACCTTTTGGACTTGCTATGTTTTGCTAAAGGAGTATGGGAAGGTTGCAACAATGAGACTTGGCTTTCTTGCAGCAGAAAAGCGTCGTCCTGATCAATTTACGGTGCTTGTTAGAAATATTCCACCAGACCCTGATGAATCTGTGAGTGAACTTGTTGAGCACTTCTTTCTAGTCAATCATCCAGATCACTATCTGACTCACCAGGTTGTTTATGATGCCAACAAACTTGCTAAGTTGGTTGAAAAGAAGAAGAAGTTTAAAAATTGGCTTGTCTACTATCAAAATAAGCTTGAAAGAACTTCAAAAAGACCTGAAATAAAGACTGGTTTCCTTGGTCTTTGGGGAAAGAAAGTGGATGCTATTGATCATCACATCACTGAAATTGACAAGTTGTCAAAAGAAATTGTTGAGGAGAGGGAAAATGTCACAAATGATCCCAAGGCCATCATGCCCGCTGCATTTGTTTCATTTAAAACAAGATGGGCTGCTGCTGTTTGTGCACAAACTCAGCAAACCAGAAATCCAACACTTTGGTTGACCGAATGGGCTCCAGAGCCACGAGATGTATATTGGCGAAACTTGCCAATTCCATATGTTTCCCTCACTGTCAGGAGGTTAATCATAGCAGTGACATTCTTTTTTCTCACTTTCTTTTTTATGATCCCCATTGCATTTGTTCAAACTCTGGCAAGTCTTGATGGAATCCAGAAAGCAGCACCATGGCTGAAGCCACTTGTTGACATCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTTGAAGGCTTTGGATCTATATCTTCTCTGGAGAGAAGATCAGCTTCTAGATATTATCTTTTCAATTTTGTGAATATATTCCTTGGGAACATACTTACTGGAACAGCATTTCAACAGCTGAGCTCTTTCATTCACCAACCAGCCGACCAATATCCTGTAACAATTGGCACTGCTATTCCTTTAAAAGCAAGTTTTTTCATTACTTATATAATGGTTGATGGATGGGCCAGTATAGCTGCAGAGGTTTTGATGTTGAAACCGCTAATTGTTTATCACTTGAAGAATTTCTTCTTGGTGAAAACTGAAAAGGACAGGGAAGAGGCCATGGATCCTGGGAGTATTGGTTTCAACACTGGAGAACCTCGTATACAATTGTACTTTTTGTTGGGTCTAGTATATGCTGCAGTGACACCTGCTGTTCTTCCTTTCATAACAGTTTTCTTTGGCCTGGCCTATCTTGTGTTCCGTCATCAGATCATTAACGTATATAATCAGGAGTATGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTCCGTATCGTGATGGCACTGATTGTCTCACAGATAGTTTTGATGGGACTCCTCACCACCAAGAAAGCTGCTTCATCAACTCCTTTTCTCATTGTGCTCCCAATACTAACCATATGGTTCCATAGGTACTGCAAAGGCCGTTTTGAATCTGCATTTGTTAAATTTCCCTTACAGGAAGCAATGATGAAAGATACATTAGAACGGGCAACAGAACCTAACCTGAACTTGAAAGGTTATCTTCAGAATGCCTATGTTCACCCAGTTTTTAAGGACAGCATGGATGACGATGATGACGAGGAAGATAGACTCAGTATAGACTTGGAAACTGAAAGTGTGACTGTGCGCACAAAACGCCAATCACGAAGGAATACACCATTGCCAAGCAAAAATAATGATGCATCATCTCCTTCTCTGTCTGATGGTATTGGAAATCATCCAGAGCCTTAA
Predicted protein sequences of Glyma20g16230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g16230.4 sequence type=predicted peptide gene model=Glyma20g16230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTTLSDIGVAAAINISTALLFFVAFAILRLQPWNDRVYFPKWYLKGLRTDPVHGRALVSKFINLDWRAYLSFLNWMPEALRMPEPELIDHAGLDSVVYLRIYLIGLKIFIPIAFLAWIVLVPVNWTSTGLEGSQIKNITSSNIDKLSVSNVHRGSERFWGHIVMAYAFTFWTCYVLLKEYGKVATMRLGFLAAEKRRPDQFTVLVRNIPPDPDESVSELVEHFFLVNHPDHYLTHQVVYDANKLAKLVEKKKKFKNWLVYYQNKLERTSKRPEIKTGFLGLWGKKVDAIDHHITEIDKLSKEIVEERENVTNDPKAIMPAAFVSFKTRWAAAVCAQTQQTRNPTLWLTEWAPEPRDVYWRNLPIPYVSLTVRRLIIAVTFFFLTFFFMIPIAFVQTLASLDGIQKAAPWLKPLVDIPFIKSFIQGFLPGIVLKLFLIFLPTILMIMSKFEGFGSISSLERRSASRYYLFNFVNIFLGNILTGTAFQQLSSFIHQPADQYPVTIGTAIPLKASFFITYIMVDGWASIAAEVLMLKPLIVYHLKNFFLVKTEKDREEAMDPGSIGFNTGEPRIQLYFLLGLVYAAVTPAVLPFITVFFGLAYLVFRHQIINVYNQEYESGAAFWPDVHFRIVMALIVSQIVLMGLLTTKKAASSTPFLIVLPILTIWFHRYCKGRFESAFVKFPLQEAMMKDTLERATEPNLNLKGYLQNAYVHPVFKDSMDDDDDEEDRLSIDLETESVTVRTKRQSRRNTPLPSKNNDASSPSLSDGIGNHPEP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
