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Report for Sequence Feature Glyma20g16200

Feature Type:gene_model
Chromosome:Gm20
Start:22592498
stop:22596679
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g16200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51010AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18946880-18948048 REVERSE LENGTH=188 SoyBaseE_val: 1.00E-66ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1NEA9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEA9_SOYBN SoyBaseE_val: 3.00E-123ISS

Expression Patterns of Glyma20g16200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16200
ParalogEvidenceComments
Glyma13g10516 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g066700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g16200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g16200
>Glyma20g16200.1   sequence type=CDS   gene model=Glyma20g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTTGCAGGAGCCCTAAGGAACATTGTTCGCCCTCTCTCAGTTGCATCATCAAGAGCTTTAATGCCTCGAATCTCCATCAATGCTTCGATGGCACCATTTTGTCCTGCTTTTCCATCTCCCTGCAAACCTCCTCAATGGCTTCATCCCCTTTGGAATCAATTCCACAGCTTGACAGACACTCGCTTCCCCAAGAGACGACCCTCTGAAAAACCTCGTCGAAAGAGAGCCAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTCAATATACACCGTGCCAACCCATACTTCCAAATAAGCCTAATGAAGGGAGTGTCAAAAGGAGAAATGAGAAGAAACGCATGAGGCAACGCCGTGCCTTTATATTGGCTGAAAAGAAGAAAAGGAAGGCTCAGCTGCAAGAGGCTAATCGGAAGAAAAATATTCAGAGGGTAGAACGTAAAATGGCTGCAGTTGCAAGGGAAAGAGAGTGGGCAGAAAGACTGGCTGAGTTGCAGCGACTTGAGGAAGAGAAGAAAAAATCTATGGCTTGA
Predicted protein sequences of Glyma20g16200
>Glyma20g16200.1   sequence type=predicted peptide   gene model=Glyma20g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFAGALRNIVRPLSVASSRALMPRISINASMAPFCPAFPSPCKPPQWLHPLWNQFHSLTDTRFPKRRPSEKPRRKRASLRPSGPYAWVQYTPCQPILPNKPNEGSVKRRNEKKRMRQRRAFILAEKKKRKAQLQEANRKKNIQRVERKMAAVAREREWAERLAELQRLEEEKKKSMA*






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