SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24015 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr4:12469887-12471197 REVERSE LENGTH=174 | SoyBase | E_val: 2.00E-50 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1493 | KOG | Anaphase-promoting complex (APC), subunit 11 | JGI | ISS | |
| PTHR22765 | Panther | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | JGI | ISS | |
| PTHR22765:SF23 | Panther | PROTEIN BINDING / ZINC ION BINDING | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_B9RYN5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RYN5_RICCO | SoyBase | E_val: 2.00E-56 | ISS |
| UniRef100_UPI000233B25E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B25E related cluster n=1 Tax=unknown RepID=UPI000233B25E | SoyBase | E_val: 1.00E-120 | ISS |
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Glyma20g16136 not represented in the dataset |
Glyma20g16136 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g10581 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g066300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g16136.1 sequence type=CDS gene model=Glyma20g16136 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTCTTCCACAAACTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCAATACTCTTCTCCATCATTCTCTTCCTCTTGTTTTACTTGTTCTACCTTAAGAGAAGGGCTTCCTCTCTATCTTCCTCTTCTCACTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCGTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTGGCAAGGGATTCACTATGTTGTGTTTGTCTGGGGGAATTTGAGCTGAAGGAAGAGGTGCTACAGATACCCTATTGCAAGCACGTGTTCCACTTCGAATGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAACCCAGCACCCCCTATTAATATTATATCATCAGACCCACCCCAGCATGGTGCTATCATTTCGGACTCCCCATTACAATTGCCACCTCAGCCACAAGACCATCAAGAAGAAGTTGTTGGTGCTTCCTCAAATGCTGCTAATTTGTCAAGGGAATGA
>Glyma20g16136.1 sequence type=predicted peptide gene model=Glyma20g16136 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLPQTATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSHLLPRTIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSLCCVCLGEFELKEEVLQIPYCKHVFHFECIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISSDPPQHGAIISDSPLQLPPQPQDHQEEVVGASSNAANLSRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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