Glyma20g16130 - SoyBase

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Report for Sequence Feature Glyma20g16130

Feature Type:	gene_model
Chromosome:	Gm20
Start:	22385592
stop:	22388400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14180	AT	Annotation by Michelle Graham. TAIR10: Myzus persicae-induced lipase 1 \| chr5:4571442-4574413 REVERSE LENGTH=418	SoyBase	E_val: 2.00E-124	ISS
GO:0002213	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to insect	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
KOG2624	KOG	Triglyceride lipase-cholesterol esterase	JGI		ISS
PTHR11005	Panther	LYSOSOMAL ACID LIPASE-RELATED	JGI		ISS
PF04083	PFAM	ab-hydrolase associated lipase region	JGI		ISS
UniRef100_I1LXJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Glycine max RepID=I1LXJ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B25F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B25F related cluster n=1 Tax=unknown RepID=UPI000233B25F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g16130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16130

Paralog	Evidence	Comments
Glyma13g10600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g066200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16130

Limit To All Plant Sequences

>Glyma20g16130.2   sequence type=CDS   gene model=Glyma20g16130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCAGATAAGGGTAACACATACACATTGCTAATGTTCAACACTGCAGTTAGCCTGTTTTCCATAGTCTTGCTTTGCATAACAGCAGCTCAAGGGAGGAAAACACTTCACCTTAACAATGAATGGCTAACATCCTTTCCAGATATTAATGATATTGATGGTATCTGCAAAACACTGGTAGAGACACAAGGTTACTCATGTGAAGAACATCAGGTTACCACAGAGGATGGCTACATCCTGAGCTTGCAGAGGATGCCAGCTGGGCGGTCCGGTGAGAAAGCTGACAAGCCGCCCGTGCTATTACAACATGGTATCTTTAGTGATGCTTCAACATGGCTGGTAAATTCTCCAGATGAATCATTGGGATTTATCTTAGCAGACAACGAGTATGATGTGTGGCTTGCCAATGTTCGTGGGACAAAATACAGCAGCGGGCACACATCGCTTATTCCTAATGACACGGCTTATTGGGATTGGTCATGGGATGAGTTGGCTAGTAATGATCTTCCTGCTTTTGTCCAATATGTGTACAACTATACTGGTCAGAGAATACACCATGCAAGTCATTCCTTGGGAACTTTAATGGCTTTAGCTGCTTTCTCTCAAGGGCAAGTGCTGAGCATGTTGAGATCAGCTTCATTACTTTGCCCAATTGCTTATATGAATCAGATTCCATCAATACCAACAAAACTTGCTGCAGACACATTTATAGCTAATCAGGACTTGTACTGGTTAGGAATCCGTGAATTCAATCCAAACGGGGGTGGTGCTGCATCAAAATTTGTGGAATACATCTGCAATAAACTAAAATTGAACTGCTCAAACCTAGTGTCACTTGTCACAGGTCCAAACTGCTGCCTAAATTCATCCAGCACAGATAGCTCTATTGAGCCAACAGCAACTAAGAATTTGATCCATCTATCTCAAATGATCAGAACAGGAAAAATAGCAAAGTATGATTATTGTGGCCAAGGACAAAATATGCAGCACTATGGACAACCAGTTCCTCCTCTTTATGACATGACGGCAATTCCAAATGAATTCCCTCTTTTTCTCAGCTATGGAGGGCAAGACTATCTATCTGATGTAAAGGATGTGCAGGTTTTGATCAATGACCTCAAAGATCATGATAGGAACAAGCTCGTGGTACTGTTCAAGGAAGATTATGCTCACCTTGATTTTGTTAGGGCTGTCAATGCTAAACAAATGATTTATGATCCTATGATATCTTTCTTTAATGTTAATTGA

Predicted protein sequences of Glyma20g16130

Limit To All Plant Sequences

>Glyma20g16130.2   sequence type=predicted peptide   gene model=Glyma20g16130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSADKGNTYTLLMFNTAVSLFSIVLLCITAAQGRKTLHLNNEWLTSFPDINDIDGICKTLVETQGYSCEEHQVTTEDGYILSLQRMPAGRSGEKADKPPVLLQHGIFSDASTWLVNSPDESLGFILADNEYDVWLANVRGTKYSSGHTSLIPNDTAYWDWSWDELASNDLPAFVQYVYNYTGQRIHHASHSLGTLMALAAFSQGQVLSMLRSASLLCPIAYMNQIPSIPTKLAADTFIANQDLYWLGIREFNPNGGGAASKFVEYICNKLKLNCSNLVSLVTGPNCCLNSSSTDSSIEPTATKNLIHLSQMIRTGKIAKYDYCGQGQNMQHYGQPVPPLYDMTAIPNEFPLFLSYGGQDYLSDVKDVQVLINDLKDHDRNKLVVLFKEDYAHLDFVRAVNAKQMIYDPMISFFNVN*

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