Glyma20g16100 - SoyBase

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Report for Sequence Feature Glyma20g16100

Feature Type:	gene_model
Chromosome:	Gm20
Start:	22282845
stop:	22286101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42050	AT	Annotation by Michelle Graham. TAIR10: DCD (Development and Cell Death) domain protein \| chr5:16815630-16816932 FORWARD LENGTH=349	SoyBase	E_val: 7.00E-108	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF10539	PFAM	Development and cell death domain	JGI		ISS
UniRef100_Q5JZR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-rich protein n=1 Tax=Glycine max RepID=Q5JZR1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5JZR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: N-rich protein n=1 Tax=Glycine max RepID=Q5JZR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g16100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16100

Paralog	Evidence	Comments
Glyma13g10640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g066100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g16100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g16100

Limit To All Plant Sequences

>Glyma20g16100.2   sequence type=transcript   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCCTACCCCTTCATTAACTTACCAGGAAATTGCACACCCCTCATCTATCTTTATTTAATACTTGTCTTCTCTCTTTTCCAACCATCTCTTGCTGCTTCACTCTTCTTCAATTCATATCATATCAATTAGATTTAGAGCTAAACATAAAATTGTTTTCACATACCATGGACAACAACAATGACTTTTGGAAATTCAGTGACCAGTTGAGGCTTGAATCTGGTTTGGCCAATCTGTCTCTGAATGATTATTCCATTTGGAGCAACAGCTACAGCTCCAAGAGGCCTGATCAGAGGAGGAACTTTGATGTCAAGGGCAGTGATTTCAACAACAACAACAACTCATCAAAGGCTTTTGATGATGATTTCAATGATGGGTGGAAGATCACCAATTCCAATGGACCCCTTTTCTCTATGCCTCACAACAACAACAACAACACTCTTGAAGTTGGAGGCTTCAACAAGGGAGGAGGAATCTATTCCAACACCAACACCACCATTTCCTCCTACCATCCTAATAACCTTAACAACAACGCTTTTGGAGGCTTCAACAAGGGAATCTATTCCAACACCACATCCTCACCCTATCTTAACAACAACCACCACCACCTCGACGACAACAACAACCTCAACAGAAATAATCTCAAGGGCTACAAGACATATTTTAAGGGTGAAGATCAGTTTCACACACCCAAAAGTGCCAAGAAGAAGAACACCACCAACAACACCAACAACAAGAAGCATGGGGACAACACTAATAATAATGATGGCACAAAGACTGGTGCTGAGAAGAAATTCAAAACACTTCCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGGTTCAAGTGATTACTAGGAAAGTTTGTGAGCCACTAGAGGAAGATTCCTTTAGACCAATTCTTCACCATTATGATGGCCCTAAGTTCCGTCTTGAACTGAGTGTGCCTGAGGTATGCATCAACTTGTGGAATATGTTACTGATCCTTATGGTAGATGATGTGGTCAACTAAATTGCGTCCTATTTTTTTTATTATTTCAGGCACTGTCTCTTCTGGATATTTTTGCAAACCAGAACAGTTTCGATGACATTTTCAAAGCCATTCCAGCATAGAAGGGTAGAAATTATACAAGAAGAGAGAAGTTACAAGGACAATGGATAATGAATGAATACTGTGGATTCATATTATTAGAGTGTCAGAAGATAATTAAGACAACGAATATTGAATTTCAGCCGTCATATATTTGTGTTATAATTACTACTATAATGTTATTTGTATAGAGGCTGTTATGCCTGGTTGCCCATTTTTTTCTTGTTATGGGTGTATATGAACATCACATAAAAGAATACAATAAGAAGGAACTAACTTTGTTCATGATTTTTTCTGCAAAATTACAAATTCAACGGAATGGCCTGCATTTTGTAGCTTTTAGTAATTGCTGGGATTGAACTCTAGGTGAAATAAATAGTGAGTGCGAGCCTGTGAGGCCCTGCTTTAAATGTTTTTCATTCAAAGGGGAGATTTGATTTATTGGTTCATTTTGGGGCATTAACATCTCTGCTTTAATCTTTGATATTTGCAAACTATGTTTGAGTTTTCGTTGGAAGATCTATTTATACATCATTAAAGGGTAATACTGATACATATGAGTATGGTTAATTTTAAGGGGACATATGATTTTCTGTAATGCCTCATATCAATTATACCACAATAAAAGGAATTCAGAGATTATACAATTAGAATAATTTTAGAAAAATAATTGATATTATTAATATTCACAACTTGTATCTACTTTTTATAATTTATCACCTAAATTTTTTATAATTAAATGTGTTTGATTTAAAATAATTACAGAAAATTTGACCCTTGGAGGTTACCTATTTCATAACAGTGAAGGTTACCTATTTATAATTGTTCCAAGTGAAGCATGTGGTTCGTCCGGTTCTTACACATTCAACTTGGAGTGTCAATTCAAATGTTGATGGTTTTGTGTATGGCTCAGTAGATAATAGGTAGAGGAGCAAATGAAATTTATTTCAAATGTGGGATAATTAGTTAGGCAAAGCTGCTACATCAGACAATGCCATTTGATAAGCTGGCGTTGCCTTAACACTAACAATTGCATAAACTAAAAGGAAGCATCTGGCTCTAATTTGACCAAAAAATTGGACCACAGTAACTAAACTATATATAAAACTTTCAGCATAAATAAACTAAGGATATTTTTACTCGAGGCTTTGTCTTCACTCTAATTCTTTGGTTATTGGTTATTTTTTACAAAATCGTTGATGAATAATGATTAACACTCACTTTATTACGCTTTATTGGGTAGAGGGAAGAGAA

>Glyma20g16100.3   sequence type=transcript   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCCTACCCCTTCATTAACTTACCAGGAAATTGCACACCCCTCATCTATCTTTATTTAATACTTGTCTTCTCTCTTTTCCAACCATCTCTTGCTGCTTCACTCTTCTTCAATTCATATCATATCAATTAGATTTAGAGCTAAACATAAAATTGTTTTCACATACCATGGACAACAACAATGACTTTTGGAAATTCAGTGACCAGTTGAGGCTTGAATCTGGTTTGGCCAATCTGTCTCTGAATGATTATTCCATTTGGAGCAACAGCTACAGCTCCAAGAGGCCTGATCAGAGGAGGAACTTTGATGTCAAGGGCAGTGATTTCAACAACAACAACAACTCATCAAAGGCTTTTGATGATGATTTCAATGATGGGTGGAAGATCACCAATTCCAATGGACCCCTTTTCTCTATGCCTCACAACAACAACAACAACACTCTTGAAGTTGGAGGCTTCAACAAGGGAGGAGGAATCTATTCCAACACCAACACCACCATTTCCTCCTACCATCCTAATAACCTTAACAACAACGCTTTTGGAGGCTTCAACAAGGGAATCTATTCCAACACCACATCCTCACCCTATCTTAACAACAACCACCACCACCTCGACGACAACAACAACCTCAACAGAAATAATCTCAAGGGCTACAAGACATATTTTAAGGGTGAAGATCAGTTTCACACACCCAAAAGTGCCAAGAAGAAGAACACCACCAACAACACCAACAACAAGAAGCATGGGGACAACACTAATAATAATGATGGCACAAAGACTGGTGCTGAGAAGAAATTCAAAACACTTCCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGGTATATATCATCTCATCTCCAATCAAATTAATTTTATTATATCTATGCACAAATTATGCTAATATTAATTTTATAAATTTAATTAAAATGTACTGATGCTGTAAAAGTAAAGTTTTATATTGTCCTTCAAAGTAAAGTTTTATATTGTCCTTCAGTCAATTGATATATCACATATCAATTGAATGATTTCTGATTAAATGGCAATATTG

Coding sequences of Glyma20g16100

Limit To All Plant Sequences

>Glyma20g16100.1   sequence type=CDS   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACAACAATGACTTTTGGAAATTCAGTGACCAGTTGAGGCTTGAATCTGGTTTGGCCAATCTGTCTCTGAATGATTATTCCATTTGGAGCAACAGCTACAGCTCCAAGAGGCCTGATCAGAGGAGGAACTTTGATGTCAAGGGCAGTGATTTCAACAACAACAACAACTCATCAAAGGCTTTTGATGATGATTTCAATGATGGGTGGAAGATCACCAATTCCAATGGACCCCTTTTCTCTATGCCTCACAACAACAACAACAACACTCTTGAAGTTGGAGGCTTCAACAAGGGAGGAGGAATCTATTCCAACACCAACACCACCATTTCCTCCTACCATCCTAATAACCTTAACAACAACGCTTTTGGAGGCTTCAACAAGGGAATCTATTCCAACACCACATCCTCACCCTATCTTAACAACAACCACCACCACCTCGACGACAACAACAACCTCAACAGAAATAATCTCAAGGGCTACAAGACATATTTTAAGGGTGAAGATCAGTTTCACACACCCAAAAGTGCCAAGAAGAAGAACACCACCAACAACACCAACAACAAGAAGCATGGGGACAACACTAATAATAATGATGGCACAAAGACTGGTGCTGAGAAGAAATTCAAAACACTTCCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGGTTCAAGTGATTACTAGGAAAGTTTGTGAGCCACTAGAGGAAGATTCCTTTAGACCAATTCTTCACCATTATGATGGCCCTAAGTTCCGTCTTGAACTGAGTGTGCCTGAGGCACTGTCTCTTCTGGATATTTTTGCAAACCAGAACAGTTTCGATGACATTTTCAAAGCCATTCCAGCATAG

>Glyma20g16100.2   sequence type=CDS   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACAACAATGACTTTTGGAAATTCAGTGACCAGTTGAGGCTTGAATCTGGTTTGGCCAATCTGTCTCTGAATGATTATTCCATTTGGAGCAACAGCTACAGCTCCAAGAGGCCTGATCAGAGGAGGAACTTTGATGTCAAGGGCAGTGATTTCAACAACAACAACAACTCATCAAAGGCTTTTGATGATGATTTCAATGATGGGTGGAAGATCACCAATTCCAATGGACCCCTTTTCTCTATGCCTCACAACAACAACAACAACACTCTTGAAGTTGGAGGCTTCAACAAGGGAGGAGGAATCTATTCCAACACCAACACCACCATTTCCTCCTACCATCCTAATAACCTTAACAACAACGCTTTTGGAGGCTTCAACAAGGGAATCTATTCCAACACCACATCCTCACCCTATCTTAACAACAACCACCACCACCTCGACGACAACAACAACCTCAACAGAAATAATCTCAAGGGCTACAAGACATATTTTAAGGGTGAAGATCAGTTTCACACACCCAAAAGTGCCAAGAAGAAGAACACCACCAACAACACCAACAACAAGAAGCATGGGGACAACACTAATAATAATGATGGCACAAAGACTGGTGCTGAGAAGAAATTCAAAACACTTCCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGGTTCAAGTGATTACTAGGAAAGTTTGTGAGCCACTAGAGGAAGATTCCTTTAGACCAATTCTTCACCATTATGATGGCCCTAAGTTCCGTCTTGAACTGAGTGTGCCTGAGGTATGCATCAACTTGTGGAATATGTTACTGATCCTTATGGTAGATGATGTGGTCAACTAA

>Glyma20g16100.3   sequence type=CDS   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACAACAATGACTTTTGGAAATTCAGTGACCAGTTGAGGCTTGAATCTGGTTTGGCCAATCTGTCTCTGAATGATTATTCCATTTGGAGCAACAGCTACAGCTCCAAGAGGCCTGATCAGAGGAGGAACTTTGATGTCAAGGGCAGTGATTTCAACAACAACAACAACTCATCAAAGGCTTTTGATGATGATTTCAATGATGGGTGGAAGATCACCAATTCCAATGGACCCCTTTTCTCTATGCCTCACAACAACAACAACAACACTCTTGAAGTTGGAGGCTTCAACAAGGGAGGAGGAATCTATTCCAACACCAACACCACCATTTCCTCCTACCATCCTAATAACCTTAACAACAACGCTTTTGGAGGCTTCAACAAGGGAATCTATTCCAACACCACATCCTCACCCTATCTTAACAACAACCACCACCACCTCGACGACAACAACAACCTCAACAGAAATAATCTCAAGGGCTACAAGACATATTTTAAGGGTGAAGATCAGTTTCACACACCCAAAAGTGCCAAGAAGAAGAACACCACCAACAACACCAACAACAAGAAGCATGGGGACAACACTAATAATAATGATGGCACAAAGACTGGTGCTGAGAAGAAATTCAAAACACTTCCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCCCATTTTTCTGTACAACTACTCCACTCACCAACTCCATGGTATCTTTGAGGCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGGTATATATCATCTCATCTCCAATCAAATTAATTTTATTATATCTATGCACAAATTATGCTAATATTAATTTTATAAATTTAATTAAAATGTACTGA

Predicted protein sequences of Glyma20g16100

Limit To All Plant Sequences

>Glyma20g16100.1   sequence type=predicted peptide   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNNNDFWKFSDQLRLESGLANLSLNDYSIWSNSYSSKRPDQRRNFDVKGSDFNNNNNSSKAFDDDFNDGWKITNSNGPLFSMPHNNNNNTLEVGGFNKGGGIYSNTNTTISSYHPNNLNNNAFGGFNKGIYSNTTSSPYLNNNHHHLDDNNNLNRNNLKGYKTYFKGEDQFHTPKSAKKKNTTNNTNNKKHGDNTNNNDGTKTGAEKKFKTLPPSESLPKNETIGGYIFVCNNDTMAENLQRQLFGLPPRYRDSVRTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCEPLEEDSFRPILHHYDGPKFRLELSVPEALSLLDIFANQNSFDDIFKAIPA*

>Glyma20g16100.2   sequence type=predicted peptide   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNNNDFWKFSDQLRLESGLANLSLNDYSIWSNSYSSKRPDQRRNFDVKGSDFNNNNNSSKAFDDDFNDGWKITNSNGPLFSMPHNNNNNTLEVGGFNKGGGIYSNTNTTISSYHPNNLNNNAFGGFNKGIYSNTTSSPYLNNNHHHLDDNNNLNRNNLKGYKTYFKGEDQFHTPKSAKKKNTTNNTNNKKHGDNTNNNDGTKTGAEKKFKTLPPSESLPKNETIGGYIFVCNNDTMAENLQRQLFGLPPRYRDSVRTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCEPLEEDSFRPILHHYDGPKFRLELSVPEVCINLWNMLLILMVDDVVN*

>Glyma20g16100.3   sequence type=predicted peptide   gene model=Glyma20g16100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNNNDFWKFSDQLRLESGLANLSLNDYSIWSNSYSSKRPDQRRNFDVKGSDFNNNNNSSKAFDDDFNDGWKITNSNGPLFSMPHNNNNNTLEVGGFNKGGGIYSNTNTTISSYHPNNLNNNAFGGFNKGIYSNTTSSPYLNNNHHHLDDNNNLNRNNLKGYKTYFKGEDQFHTPKSAKKKNTTNNTNNKKHGDNTNNNDGTKTGAEKKFKTLPPSESLPKNETIGGYIFVCNNDTMAENLQRQLFGLPPRYRDSVRTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVYIISSPIKLILLYLCTNYANINFINLIKMY*

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