Glyma20g16080 - SoyBase

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Report for Sequence Feature Glyma20g16080

Feature Type:	gene_model
Chromosome:	Gm20
Start:	22197312
stop:	22198663
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g16080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03080	AT	Annotation by Michelle Graham. TAIR10: kinase interacting (KIP1-like) family protein \| chr1:731794-737332 REVERSE LENGTH=1733	SoyBase	E_val: 1.00E-14	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7IDL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Centromere protein n=1 Tax=Medicago truncatula RepID=G7IDL0_MEDTR	SoyBase	E_val: 5.00E-45	ISS
UniRef100_UPI000233D0E0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D0E0 related cluster n=1 Tax=unknown RepID=UPI000233D0E0	SoyBase	E_val: 8.00E-92	ISS

Expression Patterns of Glyma20g16080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g16080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma20g16080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g16080

Limit To All Plant Sequences

>Glyma20g16080.1   sequence type=CDS   gene model=Glyma20g16080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAGAGGAACAACTATGATTTAGTTGGTGTTTCTAGCAAGAAGATAGCAAGTGGTTTTGGCAATGAGGTATATAAGAATGGCACAAGAGGTTGGAAGTATGAGTGTTTTGAAGTTGAAAGGGACAACGATTCTTATGATTCAATAGATGATGAGAGTAATGAAAACAGTTCAGAGACTGAATCTTTTCCTGCTCCAAGGGGTTGGGAAAGGAACTTCCAGATTCCTTATTATAGCTGGTCTTTAAATATGTCTATAGCTTTTAATGAAGATCAGACTGTTATGGCACCAGATGCAGTCTCTTACTTCCAAGACATGCAGAGAAGGATCAATGCAATTGCAAGGACAGTTAAGCAGTTAAATGAAAGTCTTAAACCAAAGAATGAAGAGAACATTCAAGCAAGCAAGCATGTTACTCAACCAGATCAAGCAAGGCCATCTATCCCAGTTACCGAGATTGAAGTTCTGCCGAAAGACATCATGAAGATGGCTGTTGGCAATCATCAAAGAGGAACAACCAAGGAACCCAAAAATAGGTATCCTTCAACAGATTCCTTGGTGGAAAAAGAGTTGAATGTGGACAAGTTAGAGCTCTCAAGAAGATTGACACTACCACGCGAAGAAGGGAACCAAAGCAAGATTTTAGAAAGACTTCATTGTGATGCACAGAAGTTGAGAAACCTCCAAATCACCATACAAGATTTGATGAAGAAAGTAGAGATAAATGAGAAGAGCACAAAAGGAAAAAGTGTTGAGTTTGGTGAGGTGAAAGGGCATCAATCAAAATTGACATGGGTGCATTTAATACCAACTTACTGTATTGCCAGTAAGATTGCTGAATCAACCCCATGTAAGATTGTTGAATCACTTGGCAAAGCATCAATCAAAATTGACACGCATGCATTTAATACCAACTTACCAATCAACAAAAAAAACTAA

Predicted protein sequences of Glyma20g16080

Limit To All Plant Sequences

>Glyma20g16080.1   sequence type=predicted peptide   gene model=Glyma20g16080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKRNNYDLVGVSSKKIASGFGNEVYKNGTRGWKYECFEVERDNDSYDSIDDESNENSSETESFPAPRGWERNFQIPYYSWSLNMSIAFNEDQTVMAPDAVSYFQDMQRRINAIARTVKQLNESLKPKNEENIQASKHVTQPDQARPSIPVTEIEVLPKDIMKMAVGNHQRGTTKEPKNRYPSTDSLVEKELNVDKLELSRRLTLPREEGNQSKILERLHCDAQKLRNLQITIQDLMKKVEINEKSTKGKSVEFGEVKGHQSKLTWVHLIPTYCIASKIAESTPCKIVESLGKASIKIDTHAFNTNLPINKKN*

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