SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g16070

Feature Type:gene_model
Chromosome:Gm20
Start:22168917
stop:22180179
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g16070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16660AT Annotation by Michelle Graham. TAIR10: heat shock protein 70 (Hsp 70) family protein | chr4:9377225-9381232 FORWARD LENGTH=867 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0104 KOG Molecular chaperones GRP170/SIL1, HSP70 superfamily JGI ISS
PTHR19375Panther HEAT SHOCK PROTEIN 70KDA JGI ISS
PTHR19375:SF8Panther HEAT SHOCK PROTEIN 70 JGI ISS
PF00012PFAM Hsp70 protein JGI ISS
UniRef100_B9S3M9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9S3M9_RICCO SoyBaseE_val: 0ISS
UniRef100_I1NEA1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEA1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g16070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16070
ParalogEvidenceComments
Glyma13g10700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g065900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g16070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g16070
>Glyma20g16070.1   sequence type=CDS   gene model=Glyma20g16070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGATTGGAATTATGGACGGATGATGACTGCTTGCGGCCAAACGCCGCAAAAAATGGCGTCGTTGAAGGTGGCGCTACTGGCGCTGTTCTCCGTCGCGCTCATGTTCTCTCCGTCGCAGTCCGCGGTCTTCAGCGTCGATCTAGGTTCCGAATCGGTGAAAGTGGCGGTGGTGAACCTGAAGCCCGGCCAATCCCCGATCTGCATTGCGATCAACGAGATGTCCAAGCGCAAATCCCCGGCGCTGGTCTCCTTCCACGACGGCGACCGCCTCCTCGGTGAGGAGGCCGCCGGCCTCGCCGCGCGCTACCCGCAGAAGGTCTATTCCCAAATGCGCGACCTCATCGCCAAACCCTACGCCTCCGGGCAGAGGATTCTCAACTCAATGTACCTTCCCTTCCAGACCAAGGAAGATTCACGAGGTGGCGTGAGTTTTCAAAGCGAAAACGACGACGCCGTTTACTCCCCCGAGGAGCTGGTGGCCATGGTGTTAGGTTATGCGGCTAATTTGGCAGAGTTTCACGCGAAGATTCCGATAAAGGACGCGGTGATCGCGGTGCCGCCGCACATGGGACAGGCGGAGCGGAGAGGGTTGCTTGCGGCGGCGCAGTTAGCGGGGATTAACGTTTTGTCTCTGATAAACGAGCATTCCGGCGCGGCGCTGCAGTACGGGATCGACAAGGACTTCTCGAACGAGTCTCGGCACGTGATCTTCTACGACATGGGCGCGAGCAGCAGCTACGCGGCGCTCGTGTACTTCTCAGCGTACAAGGGGAAGGAGTACGGGAAGAGCGTATCGGTGAATCAGTTTCAGGTGAAGGACGTGCGCTGGAACCCGGAGCTCGGTGGCCAGCATATGGAGCTTCGGTTGGTCGAGTATTTTGCGGATCAGTTCAATGCACATGTTGGAGGTGGAATCGATGTCCGGAAGTTCCCCAAGGCTATGGCTAAGTTGAAGAAACAGGTTAAAAGGACTAAAGAGATTCTTAGTGCTAACACAGCAGCTCCTATTTCAGTTGAATCGCTTCTTGATGACGTCGATTTCAGGAGCACAATAACCCGTGAGAAATTTGAAGAGCTCTGTGAAGACATTTGGGAAAAATCACTCTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGGCTAAGCTTCAAGAATTCCTTGGGAGAAAAGAACTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGTGCAGCTCTGCATGCTGCAAATTTAAGTGATGGAATCAAATTGAACCGCAAACTAGGAATGGTTGATGGCTCCTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGATGTTTAGATCCGTTAATCATAACAAAGATTTTGAAGTTTCACTAGCTTATGAAAGTGATAATTATTTGCCTCCTGGTGTTACCTCTCCTGAAATTGCTCAATACCAGATATCTGGTTTGACAGATGCAAGTCAGAAATACTCATCTCGGAATCTGTCATCCCCCATCAAGGCAAACATTCATTTTTCTCTTAGTAGAAGTGGAATTCTTTCTCTGGATCGGGCAGATGCTGTTATTGAAATAACAGAGTGGGTGGAAGTTCCTAGGAAGAATTTGACCATAGAGAATTCAACCATTTCATCAAATGTTTCGGCTGAATCTGCTGCTGGTAATAGTACTGAGGAAAACAACGAAAGCGTGCAAACTGATAGTGGGGTTAATAAGGCATCCAACATTAGTGCAGAGGAGCAAGCTGCCACTGAGCCTGCTACAGAGAAAAAGCTGAAAAGGCAGACTTTTAGGATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTGCTGAAGCCAAAAGAAAATTACAAGTACTAGATCAAAAAGATGCAGACAGAAAAAGAACAGCTGAGTTAAAGAATAATTTAGAAGGATATATATATACTACCAAGGAAAAGATTGAAACGCTTGAGGAGTTTGAAAAAGTTTCTACAAGTGAGGAACGCCAGTCCTTCATTGAGAAGCTTGATCAGGTTAACCCTTTTCCTTGGGTGCAAGATTGGTTGTATACAGATGGTGAAGATGCCAATGCAACAGAGTTTCAAGAGCATCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAGTGGTAAAGTTTTTCCTGAATTGGTTAATATCTGTTTCAGGTTAAAAGAGCTTACAACTCGGCCAGCAGCAGTTGAGCATGCTCATAAGTACATTGATGAGTTGAAACAGATTGTTCAAGAGTGGAAAGCAAAGAAGCCTTGGCTTCCACAAGAAAGAGTAGACGAGGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAAAGAAGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTGTAAAGAACGAAACTGAGAGCAGCAGTGCGCAGAATACAGAGACTTCTGATTCTAACTCAGCTGATAGTTCCTCTTCAAGTGATTCATCTGCCAACAGTTCAGAAGGCACAAGCAAAGAGACGGTTACTGAGCAATCTGAAGGTCACGATGAGCTATGA
Predicted protein sequences of Glyma20g16070
>Glyma20g16070.1   sequence type=predicted peptide   gene model=Glyma20g16070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDWNYGRMMTACGQTPQKMASLKVALLALFSVALMFSPSQSAVFSVDLGSESVKVAVVNLKPGQSPICIAINEMSKRKSPALVSFHDGDRLLGEEAAGLAARYPQKVYSQMRDLIAKPYASGQRILNSMYLPFQTKEDSRGGVSFQSENDDAVYSPEELVAMVLGYAANLAEFHAKIPIKDAVIAVPPHMGQAERRGLLAAAQLAGINVLSLINEHSGAALQYGIDKDFSNESRHVIFYDMGASSSYAALVYFSAYKGKEYGKSVSVNQFQVKDVRWNPELGGQHMELRLVEYFADQFNAHVGGGIDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLLDDVDFRSTITREKFEELCEDIWEKSLLPVKEVLEHSGLSLEQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMVDGSLYGFVVELNGPDLLKDESSRQILVPRMKKVPSKMFRSVNHNKDFEVSLAYESDNYLPPGVTSPEIAQYQISGLTDASQKYSSRNLSSPIKANIHFSLSRSGILSLDRADAVIEITEWVEVPRKNLTIENSTISSNVSAESAAGNSTEENNESVQTDSGVNKASNISAEEQAATEPATEKKLKRQTFRIVEKITGFGMSLSQDFLAEAKRKLQVLDQKDADRKRTAELKNNLEGYIYTTKEKIETLEEFEKVSTSEERQSFIEKLDQVNPFPWVQDWLYTDGEDANATEFQEHLDQLKAVGDPIFFSGKVFPELVNICFRLKELTTRPAAVEHAHKYIDELKQIVQEWKAKKPWLPQERVDEVIKSSEKLKNWLDEKEAEQKKTSGFSKPAFTSEEVYLKVLDLQTKVASINRIPKPKPKVQKPVKNETESSSAQNTETSDSNSADSSSSSDSSANSSEGTSKETVTEQSEGHDEL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo