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Report for Sequence Feature Glyma20g16030

Feature Type:gene_model
Chromosome:Gm20
Start:22122475
stop:22131543
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g16030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32170AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:13666476-13670924 FORWARD LENGTH=504 SoyBaseE_val: 0ISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG2798 KOG Putative trehalase JGI ISS
PTHR12303Panther UNCHARACTERIZED JGI ISS
PF07942PFAM N2227-like protein JGI ISS
UniRef100_I1NEA0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NEA0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8RWX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: N2227-like domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q8RWX2_ARATH SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g16030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g16030
ParalogEvidenceComments
Glyma13g10730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g16030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g065600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g16030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g16030
>Glyma20g16030.2   sequence type=CDS   gene model=Glyma20g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGGCAGAGGAGGAGCAGCAACGTCGTCGTTTAAAGCTTGAAGAGGCCCTTGAAATCCAATCCCTCAGACGCATCATTAGTGCTTACCTCAACTATCCTGATGCCGCAGAAGAGGATGTTAGAAGATATGAGAGGTCTTATAGGAAGCTTCCACCTTCCCATAAGGCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAAGCATTTGAACCTCCACTTGACATGAGCCAGGACGTAGATTTTAGTGAAGATCCACATCCTGAATCGACCCAAAAAGATCATTTAGTTTCTGAAGGGATTAGTGCTTGTTCATGTGAGTCAGTCCCTGTGAGAATAACATGTTCTGTATCTGATCAACATCGTTGTGTGGAAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAAGCATGATACATCCTAAAGAAACTAGTGAATACTGTGGAAGTCCTATTGCTGATTCCAATGGCAATGTACCGGTCACGTCATCACAACAACAATGGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAGGGTAAAAACGAACGTGATCAGTGCTACAGCCCTATACTTGACGAGCTTAATATGCTATTCCCTAATCGCAGTAAAGATAGTCCACCTGCATGTTTAGTTCCTGGTGCTGGACTTGGTCGGCTGGCCCTGGAGATTTCATGTTTAGGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCGAGCTTTATTCTTAACCATTCCCAAACGGCTGGCGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATGCATCCAGCCAGTGCAGGAATTACTGAAGGTTTTTCCATGTGTGGAGGTGACTTTGTTGAAGTTTACAGTGATTCAAGCCAAGTTGGTGCATGGGATGCAGTTGTAACTTGTTTCTTTATCGATACAGCTCATAATATTGTTGAGTACATTGAAATAATTTCAAAAATTTTGAAAGAAGGGGGAGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATGAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTCGCATTACATTATGGATTTGAATTAGAGAAAGAAAGGACTATTGAGACAACTTACACCGCAAATTCTAGATCAATGATGCAAAATCGTTACTTTTCTGCATTTTGGACAATGAGAAAAAAATCTGCTGCAGTGCAGCAGCAAGTGCCCTGA
Predicted protein sequences of Glyma20g16030
>Glyma20g16030.2   sequence type=predicted peptide   gene model=Glyma20g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEAEEEQQRRRLKLEEALEIQSLRRIISAYLNYPDAAEEDVRRYERSYRKLPPSHKALLSHYSRKFQRLRWCISMNTHFIFGMLQAFEPPLDMSQDVDFSEDPHPESTQKDHLVSEGISACSCESVPVRITCSVSDQHRCVEGGNHTCISQAQMHSNEEVDIESCHQSNTGSHSPSMIHPKETSEYCGSPIADSNGNVPVTSSQQQWLDPSLKLNVPLVDVDKVRCIIRNIVRDWAAEGKNERDQCYSPILDELNMLFPNRSKDSPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQTAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDSSQVGAWDAVVTCFFIDTAHNIVEYIEIISKILKEGGVWINLGPLLYHFADMYGQDDEMSIELSLEDVKRVALHYGFELEKERTIETTYTANSRSMMQNRYFSAFWTMRKKSAAVQQQVP*






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