SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03120 | AT | Annotation by Michelle Graham. TAIR10: signal peptide peptidase | chr2:937554-940083 FORWARD LENGTH=344 | SoyBase | E_val: 9.00E-18 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
| PTHR12174 | Panther | SIGNAL PEPTIDE PEPTIDASE | JGI | ISS | |
| PF04258 | PFAM | Signal peptide peptidase | JGI | ISS | |
| UniRef100_B9SM25 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Minor histocompatibility antigen H13, putative n=1 Tax=Ricinus communis RepID=B9SM25_RICCO | SoyBase | E_val: 4.00E-16 | ISS |
| UniRef100_I1NE99 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE99_SOYBN | SoyBase | E_val: 2.00E-170 | ISS |
|
Glyma20g16020 not represented in the dataset |
Glyma20g16020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g065400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g16020.1 sequence type=CDS gene model=Glyma20g16020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCTACATCCTCCTTATCAGGTATGTCTACTAAACCTTCGTTTAAACCCTCATCTCCACACACGTGCCTTCATTGCCCTAAAAAACTACAAACCAACGCTCAACTTATCAGTTGCAAAACCGTTGTGGTGCTTAAACTTATTGGGGGCTTAAATAGGAACCCTTTTCCATTCGGTTTTTCGTCTGTTGTTCTGTCCTTACTAACAACCCTGCATTTTCAATCATTTAAACTGGAGCATAGGGATATGGCAGAGCTTCTTCACGGGAGTTCGAATCTCAAGTGCTTGTTCATGAGCCATATTTATTTTAGTGGCCCTGAAGCAAGGTTGAAAGATTGCCCAAATTGGGTACTACTGAGTGACAAAGAGGAAGCAGGCTTGATTCCCGAGTTTCAAAATTTAATCCACCTAGAATTGGGCTATTCGGATTATACTGGGGATTGGGTTGAGGGTCATAGGTCGTTGCTGGAATCCTTGGGACTTTTTTTGTATGTGTGGTATGCTTTGCAGAAGCATTGGCTAGCAAATAATACATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGATCTTTCAAGACTGGTGCTATTCTCTTGGCAAGCATTTACCCTTTGGCTGATTGCATATTATGTTTGTCTATTTGTGAGTTAAATATTTTGCTAATGAATTGGAATCTTATTGTGTCCAAGTTACTATAA
>Glyma20g16020.1 sequence type=predicted peptide gene model=Glyma20g16020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTSSLSGMSTKPSFKPSSPHTCLHCPKKLQTNAQLISCKTVVVLKLIGGLNRNPFPFGFSSVVLSLLTTLHFQSFKLEHRDMAELLHGSSNLKCLFMSHIYFSGPEARLKDCPNWVLLSDKEEAGLIPEFQNLIHLELGYSDYTGDWVEGHRSLLESLGLFLYVWYALQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLASIYPLADCILCLSICELNILLMNWNLIVSKLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
