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Report for Sequence Feature Glyma20g15960

Feature Type:gene_model
Chromosome:Gm20
Start:21877675
stop:21880397
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g15960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05260AT Annotation by Michelle Graham. TAIR10: cytochrome p450 79a2 | chr5:1559778-1561765 REVERSE LENGTH=523 SoyBaseE_val: 0ISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0016709GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF35Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_I1NE96UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NE96_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6J540UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoleucine N-monooxygenase 2 n=1 Tax=Lotus japonicus RepID=C79D4_LOTJA SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g15960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g15960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g065100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g15960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g15960
>Glyma20g15960.1   sequence type=CDS   gene model=Glyma20g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCACTCCTCTATTCATTTGTTGTCCCACCTTCACCTTCAGGCCTTGTGGACTTCTTTGATTATTATTGTAGTTTTTTGCATAACCTTTCTCAAAGGCTTTGGTCCTCACTTGTTTAAAAGAACCAAGAAACAAAAACTACCCTTACCCCCCGGTCCCAAACCATGGCCTATAATCGGTAACCTTCCTGAAATGGTTGCAAATAGGCCTACGTTCCGGTGGATACAAAAATTAATGAATGAAATGAACACCGAAATTGCATGTATCCAACTAGGAAATGTCCATGTTATTCCCGTGACTTGTCCCACCATTGCTTGTGAATTCTTGAGAAAACAAGATGCTAATTTTGCTTCTAGACCCACAAGCATGACCACTACTCTTATTAGTCGCGGATATCTCACCACAACCCTTGTACCCTTTGGGGAACAATGGAAGAAAATGAGGAGAATTGTTGGTAACGATTTGTTGTCCACCACCTCCCACCAACGACTTGAATATAAGAGGGTTGAGGAAGCCAACAACCTTGTATTTCACATCTACAACAATTGCAAAAACAATATTGCGAATGGTAATAATAATGTTGGCCTTGTGAACGTGAGAGATGTCGCACAACACTATTGTTGCAATGTGATGAAGAAATTGAACTTTAGTAGGAGGTACTTTGGGGAGGGTAAGAAGGATGGAGGGCCTGGTAGTGAGGAAGTGGAACATCTTGATGCCATTTTCACAATGCTTAAATACATTTATGACTTTAGAGTTTCTGACTATGTCCCTTGCTTGAGGGGACTTGACTTAGATGGTCATGAGGGCAAGGTGAAGAAGGCCATAGAAACTGTGGGCAAGTATCATGATCCCATCATTGAGCAGCGAATCAAAGAATGGGATGAAGGGTCCAAAATTCATGGAGAGGATTTCCTTGATATCCTTATCTCACTCAAAGATGCCAACAATAACCCGATGTTGACTACACAGGAAATCAAGGCACAAATCATAGAATTGATGATGGCAGGGGTGGACAACCCATCAAATGCAGTCGAATGGGGTCTTGCAGAGATGATAAACCAACCCAAGTTGCTTCAGCGCGCAACAGAAGAATTGGACAAGGTAGTGGGGAAAGAGAGACTGGTCCAAGAATCCGACATTTCAAAGCTCAACTACATAAAAGCATGTGCAAGAGAAGCTTTTCGTCTTCACCCTATTGTGCCTTTCAATGTTCCCCATGTCTCTATCAAAGACACAATAGTTGGAAACTACCTAATCCCAAAGGGTAGTCACATATTGTTAAGTAGACAAGAAATTGGGCGAAACCAAAAAGTTTGGGGTAACGAAGCTCACAAGTTCAAGCCAGAACGTCACCTGATAATGAATAAGAGTGAGGTTGTTGTTTTGACGGAGCCAGATTTGAAGTTTATTTCGTTCAGCACGGGACGACGTGGTTGTCCAGCTATCATGCTTGGTACCACAATGACTGTGATGCTATTTGCTAGGTTGCTTCAAGCCTTCACTTGGACTGCACCACCCAATGTGTCACGTATCAACCTTGCTGAGAACAATCATGATATTCTTCTTGGCCACCCACTTGTGGCACTAGCAAAACCAAGATTAACACCAGAGCTTTATGCCATGCACGACAAGTAG
Predicted protein sequences of Glyma20g15960
>Glyma20g15960.1   sequence type=predicted peptide   gene model=Glyma20g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHSSIHLLSHLHLQALWTSLIIIVVFCITFLKGFGPHLFKRTKKQKLPLPPGPKPWPIIGNLPEMVANRPTFRWIQKLMNEMNTEIACIQLGNVHVIPVTCPTIACEFLRKQDANFASRPTSMTTTLISRGYLTTTLVPFGEQWKKMRRIVGNDLLSTTSHQRLEYKRVEEANNLVFHIYNNCKNNIANGNNNVGLVNVRDVAQHYCCNVMKKLNFSRRYFGEGKKDGGPGSEEVEHLDAIFTMLKYIYDFRVSDYVPCLRGLDLDGHEGKVKKAIETVGKYHDPIIEQRIKEWDEGSKIHGEDFLDILISLKDANNNPMLTTQEIKAQIIELMMAGVDNPSNAVEWGLAEMINQPKLLQRATEELDKVVGKERLVQESDISKLNYIKACAREAFRLHPIVPFNVPHVSIKDTIVGNYLIPKGSHILLSRQEIGRNQKVWGNEAHKFKPERHLIMNKSEVVVLTEPDLKFISFSTGRRGCPAIMLGTTMTVMLFARLLQAFTWTAPPNVSRINLAENNHDILLGHPLVALAKPRLTPELYAMHDK*






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