Glyma20g15460 - SoyBase

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Report for Sequence Feature Glyma20g15460

Feature Type:	gene_model
Chromosome:	Gm20
Start:	21263771
stop:	21277517
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g15460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22290	AT	Annotation by Michelle Graham. TAIR10: Endoplasmic reticulum vesicle transporter protein \| chr3:7882082-7885260 FORWARD LENGTH=354	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2667	KOG	COPII vesicle protein	JGI		ISS
PTHR10984	Panther	SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN NY-BR-84-RELATED	JGI		ISS
PTHR10984:SF25	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07970	PFAM	Endoplasmic reticulum vesicle transporter	JGI		ISS
UniRef100_I1NE92	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE92_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94K91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum vesicle transporter protein n=2 Tax=Arabidopsis thaliana RepID=Q94K91_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g15460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g15460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g064700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g15460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g15460

Limit To All Plant Sequences

>Glyma20g15460.5   sequence type=transcript   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACGTACCAATCCCAATTAACTAGTCAACAATGCACGCGTATAATTAAAACAGAGATAGCTAAATAAAAGGAGAAAGGAAAATGCCATAAATTAAAGAGAATCCTAAATTCTGTAGGCGTGTTGTGATTATCAGAAGACCAAATCGAGGAATCCGGAAAGGGAAGAAGAAGAAGAAGAAGAGAGTGGGTTGGGTTGCGTGCCCCGTTCCGTTCGTTCTTCCCCTTTCCTTTCAATTCTTTCTTTTCAATTCTTTTTCTTCTGAACACAGAAAAAACAGAAGATGGGAATGAAACAAGTCATTAAAAACCTCGACGCCTTTCCTCGCGCCGAGGATCACTTGTTGCAGAAAACCCAATCTGGGGCTCTCGTATCCGTAATTGGTCTCATTATAATGGCCACATTGTTCGTTCACGAGCTCGGTTATTATCTTACAACTTACACCGTTCACCAGATGTCAGTGGACTTGAAGCGAGGGGAAACTCTTCCAATTCATATTAACATGACGTTTCCTTCTTTACCTTGTGATGTTTTGAGTGTAGATGCCATCGATATGTCGGGCAAGCATGAGGTGGATCTTGATACCAACATATGGAAACTTCGCTTGAACAGTTATGGCCATATAATTGGCACTGAATATATATCTGATCTTGTTGAAAAGGAACATACCCATCACAAGCATGATGATAATAAAAATCATGAGCATTCAGAACAGAAGATTCATTTGCAAAACCTTGATGAATCTACTGAAAATATTATCAAGAAAGTTAAGGAAGCATTAAAAAATGGGGAAGGATGCCGGGTTTATGGTGTTTTAGATGTTCAAAGGGTTGCTGGAAATTTCCATATTTCAGTACATGGACTAAATATATATGTTGCACAAATGATCTTTGATGGAGCAAAGAACGTGAATGTAAGTCATTTCATCCATGATTTATCATTTGGCCCCAAGTATCCAGGACTTCACAACCCACTTGATGACACAACAAGGATTCTGCATGATACCAGTGGAACATTTAAATATTATATAAAGGTTGTTCCAACCGAATATAGATATATCTCAAAAGAAGTTCTACCAACCAATCAGTTCTCAGTATCAGAATATTATTCCCCCATTAATCAGTTTGATCGGACCTGGCCAGCTGTCTACTTTTTGTATGATCTATCACCTATTACTGTCACTATCAAGGAAGAGCGCCGCAGTTTTCTTCATTTTATTACTCGACTTTGTGCTGTGCTAGGTGGAACCTTTGCTGTGACAGGAATGCTTGACCGTTGGATGTACAGACTTCTGGAAACTTTGACTAAATCAAAGTCCAAACGGTAGATCATGAAGTCATTGCAATTTCTAGTAACAACTCTGCGTCTCCAACCAAAGGGGTTTCAGGCACTATGGAATTTACTGCCACCAAAGATTAAAAATATAGTGGTTGCATAGTTGAATCAAGCATTAAATTTTAAGCACGTGTTCATACAGTTCCTTGTAATGTCTGACATCAATGATTAACAGATCTTAATCTCTTTTCTTTTGGAATGAGTGTTTTGGGTTCGGTTTTGACTGTGGACAGCATTGTCTTATGAACCACACCTGTGGAATTTACTTTGTAGAACTCAAATTTTGATTATAGTGACTAAGATAGCTGTCTGTTTCTGTAGTCGTGCAACTCCACA

>Glyma20g15460.6   sequence type=transcript   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAATCCTAAATTCTGTAGGCGTGTTGTGATTATCAGAAGACCAAATCGAGGAATCCGGAAAGGGAAGAAGAAGAAGAAGAAGAGAGTGGAAAAAACAGAAGATGGGAATGAAACAAGTCATTAAAAACCTCGACGCCTTTCCTCGCGCCGAGGATCACTTGTTGCAGAAAACCCAATCTGGGGCTCTCGTATCCGTAATTGGTCTCATTATAATGGCCACATTGTTCGTTCACGAGCTCGGTTATTATCTTACAACTTACACCGTTCACCAGATGTCAGTGGACTTGAAGCGAGGGGAAACTCTTCCAATTCATATTAACATGACGTTTCCTTCTTTACCTTGTGATGTTTTGAGTGTAGATGCCATCGATATGTCGGGCAAGCATGAGGTGGATCTTGATACCAACATATGGAAACTTCGCTTGAACAGTTATGGCCATATAATTGGCACTGAATATATATCTGATCTTGTTGAAAAGGAACATACCCATCACAAGCATGATGATAATAAAAATCATGAGCATTCAGAACAGAAGATTCATTTGCAAAACCTTGATGAATCTACTGAAAATATTATCAAGAAAGTTAAGGAAGCATTAAAAAATGGGGAAGGATGCCGGGTTTATGGTGTTTTAGATGTTCAAAGGGTTGCTGGAAATTTCCATATTTCAGTACATGGACTAAATATATATGTTGCACAAATGATCTTTGATGGAGCAAAGAACGTGAATGTAAGTCATTTCATCCATGATTTATCATTTGGCCCCAAGTATCCAGGACTTCACAACCCACTTGATGACACAACAAGGATTCTGCATGATACCAGTGGAACATTTAAATATTATATAAAGGTTGTTCCAACCGAATATAGATATATCTCAAAAGAAGTTCTACCAACCAATCAGTTCTCAGTATCAGAATATTATTCCCCCATTAATCAGTTTGATCGGACCTGGCCAGCTGTCTACTTTTTGTATGATCTATCACCTATTACTGTCACTATCAAGGAAGAGCGCCGCAGTTTTCTTCATTTTATTACTCGACTTTGTGCTGTGCTAGGTGGAACCTTTGCTGTGACAGGAATGCTTGACCGTTGGATGTACAGACTTCTGGAAACTTTGACTAAATCAAAGTCCAAACGGTAGATCATGAAGTCATTGCAATTTCTAGTAACAACTCTGCGTCTCCAACCAAAGGGGTTTCAGGCACTATGGAATTTACTGCCACCAAAGATTAAAAATATAGTGGTTGCATAGTTGAATCAAGCATTAAATTTTAAGCACGTGTTCATACAGTTCCTTGTAATGTCTGACATCAATGATTAACAGATCTTAATCTCTTTTCTTTTGGAATGAGTGTTTTGGGTTCGGTTTTGACTGTGGACAGCATTGTCTTATGAACCACACCTGTGGAATTTACTTTGTAGAACTCAAATTTTGATTATAGTGACTAAGATAGCTGTCTGTTTCTGTAGTCGTGCAACTCC

Coding sequences of Glyma20g15460

Limit To All Plant Sequences

>Glyma20g15460.4   sequence type=CDS   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATGAAACAAGTCATTAAAAACCTCGACGCCTTTCCTCGCGCCGAGGATCACTTGTTGCAGAAAACCCAATCTGGGGCTCTCGTATCCGTAATTGGTCTCATTATAATGGCCACATTGTTCGTTCACGAGCTCGGTTATTATCTTACAACTTACACCGTTCACCAGATGTCAGTGGACTTGAAGCGAGGGGAAACTCTTCCAATTCATATTAACATGACGTTTCCTTCTTTACCTTGTGATGTTTTGAGTGTAGATGCCATCGATATGTCGGGCAAGCATGAGGTGGATCTTGATACCAACATATGGAAACTTCGCTTGAACAGTTATGGCCATATAATTGGCACTGAATATATATCTGATCTTGTTGAAAAGGAACATACCCATCACAAGCATGATGATAATAAAAATCATGAGCATTCAGAACAGAAGATTCATTTGCAAAACCTTGATGAATCTACTGAAAATATTATCAAGAAAGTTAAGGAAGCATTAAAAAATGGGGAAGGATGCCGGGTTTATGGTGTTTTAGATGTTCAAAGGGTTGCTGGAAATTTCCATATTTCAGTACATGGACTAAATATATATGTTGCACAAATGATCTTTGATGGAGCAAAGAACGTGAATGTAAGTCATTTCATCCATGATTTATCATTTGGCCCCAAGTATCCAGGACTTCACAACCCACTTGATGACACAACAAGGATTCTGCATGATACCAGTGGAACATTTAAATATTATATAAAGGTTGTTCCAACCGAATATAGATATATCTCAAAAGAAGTTCTACCAACCAATCAGTTCTCAGTATCAGAATATTATTCCCCCATTAATCAGTTTGATCGGACCTGGCCAGCTGTCTACTTTTTGTATGATCTATCACCTATTACTGTCACTATCAAGGAAGAGCGCCGCAGTTTTCTTCATTTTATTACTCGACTTTGTGCTGTGCTAGGTGGAACCTTTGCTGTGACAGGAATGCTTGACCGTTGGATGTACAGACTTCTGGAAACTTTGACTAAATCAAAGTCCAAACGGTAG

>Glyma20g15460.5   sequence type=CDS   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATGAAACAAGTCATTAAAAACCTCGACGCCTTTCCTCGCGCCGAGGATCACTTGTTGCAGAAAACCCAATCTGGGGCTCTCGTATCCGTAATTGGTCTCATTATAATGGCCACATTGTTCGTTCACGAGCTCGGTTATTATCTTACAACTTACACCGTTCACCAGATGTCAGTGGACTTGAAGCGAGGGGAAACTCTTCCAATTCATATTAACATGACGTTTCCTTCTTTACCTTGTGATGTTTTGAGTGTAGATGCCATCGATATGTCGGGCAAGCATGAGGTGGATCTTGATACCAACATATGGAAACTTCGCTTGAACAGTTATGGCCATATAATTGGCACTGAATATATATCTGATCTTGTTGAAAAGGAACATACCCATCACAAGCATGATGATAATAAAAATCATGAGCATTCAGAACAGAAGATTCATTTGCAAAACCTTGATGAATCTACTGAAAATATTATCAAGAAAGTTAAGGAAGCATTAAAAAATGGGGAAGGATGCCGGGTTTATGGTGTTTTAGATGTTCAAAGGGTTGCTGGAAATTTCCATATTTCAGTACATGGACTAAATATATATGTTGCACAAATGATCTTTGATGGAGCAAAGAACGTGAATGTAAGTCATTTCATCCATGATTTATCATTTGGCCCCAAGTATCCAGGACTTCACAACCCACTTGATGACACAACAAGGATTCTGCATGATACCAGTGGAACATTTAAATATTATATAAAGGTTGTTCCAACCGAATATAGATATATCTCAAAAGAAGTTCTACCAACCAATCAGTTCTCAGTATCAGAATATTATTCCCCCATTAATCAGTTTGATCGGACCTGGCCAGCTGTCTACTTTTTGTATGATCTATCACCTATTACTGTCACTATCAAGGAAGAGCGCCGCAGTTTTCTTCATTTTATTACTCGACTTTGTGCTGTGCTAGGTGGAACCTTTGCTGTGACAGGAATGCTTGACCGTTGGATGTACAGACTTCTGGAAACTTTGACTAAATCAAAGTCCAAACGGTAG

>Glyma20g15460.6   sequence type=CDS   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATGAAACAAGTCATTAAAAACCTCGACGCCTTTCCTCGCGCCGAGGATCACTTGTTGCAGAAAACCCAATCTGGGGCTCTCGTATCCGTAATTGGTCTCATTATAATGGCCACATTGTTCGTTCACGAGCTCGGTTATTATCTTACAACTTACACCGTTCACCAGATGTCAGTGGACTTGAAGCGAGGGGAAACTCTTCCAATTCATATTAACATGACGTTTCCTTCTTTACCTTGTGATGTTTTGAGTGTAGATGCCATCGATATGTCGGGCAAGCATGAGGTGGATCTTGATACCAACATATGGAAACTTCGCTTGAACAGTTATGGCCATATAATTGGCACTGAATATATATCTGATCTTGTTGAAAAGGAACATACCCATCACAAGCATGATGATAATAAAAATCATGAGCATTCAGAACAGAAGATTCATTTGCAAAACCTTGATGAATCTACTGAAAATATTATCAAGAAAGTTAAGGAAGCATTAAAAAATGGGGAAGGATGCCGGGTTTATGGTGTTTTAGATGTTCAAAGGGTTGCTGGAAATTTCCATATTTCAGTACATGGACTAAATATATATGTTGCACAAATGATCTTTGATGGAGCAAAGAACGTGAATGTAAGTCATTTCATCCATGATTTATCATTTGGCCCCAAGTATCCAGGACTTCACAACCCACTTGATGACACAACAAGGATTCTGCATGATACCAGTGGAACATTTAAATATTATATAAAGGTTGTTCCAACCGAATATAGATATATCTCAAAAGAAGTTCTACCAACCAATCAGTTCTCAGTATCAGAATATTATTCCCCCATTAATCAGTTTGATCGGACCTGGCCAGCTGTCTACTTTTTGTATGATCTATCACCTATTACTGTCACTATCAAGGAAGAGCGCCGCAGTTTTCTTCATTTTATTACTCGACTTTGTGCTGTGCTAGGTGGAACCTTTGCTGTGACAGGAATGCTTGACCGTTGGATGTACAGACTTCTGGAAACTTTGACTAAATCAAAGTCCAAACGGTAG

Predicted protein sequences of Glyma20g15460

Limit To All Plant Sequences

>Glyma20g15460.4   sequence type=predicted peptide   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMKQVIKNLDAFPRAEDHLLQKTQSGALVSVIGLIIMATLFVHELGYYLTTYTVHQMSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYISDLVEKEHTHHKHDDNKNHEHSEQKIHLQNLDESTENIIKKVKEALKNGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFDGAKNVNVSHFIHDLSFGPKYPGLHNPLDDTTRILHDTSGTFKYYIKVVPTEYRYISKEVLPTNQFSVSEYYSPINQFDRTWPAVYFLYDLSPITVTIKEERRSFLHFITRLCAVLGGTFAVTGMLDRWMYRLLETLTKSKSKR*

>Glyma20g15460.5   sequence type=predicted peptide   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMKQVIKNLDAFPRAEDHLLQKTQSGALVSVIGLIIMATLFVHELGYYLTTYTVHQMSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYISDLVEKEHTHHKHDDNKNHEHSEQKIHLQNLDESTENIIKKVKEALKNGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFDGAKNVNVSHFIHDLSFGPKYPGLHNPLDDTTRILHDTSGTFKYYIKVVPTEYRYISKEVLPTNQFSVSEYYSPINQFDRTWPAVYFLYDLSPITVTIKEERRSFLHFITRLCAVLGGTFAVTGMLDRWMYRLLETLTKSKSKR*

>Glyma20g15460.6   sequence type=predicted peptide   gene model=Glyma20g15460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMKQVIKNLDAFPRAEDHLLQKTQSGALVSVIGLIIMATLFVHELGYYLTTYTVHQMSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYISDLVEKEHTHHKHDDNKNHEHSEQKIHLQNLDESTENIIKKVKEALKNGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMIFDGAKNVNVSHFIHDLSFGPKYPGLHNPLDDTTRILHDTSGTFKYYIKVVPTEYRYISKEVLPTNQFSVSEYYSPINQFDRTWPAVYFLYDLSPITVTIKEERRSFLHFITRLCAVLGGTFAVTGMLDRWMYRLLETLTKSKSKR*

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