Glyma20g15440 - SoyBase

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Report for Sequence Feature Glyma20g15440

Feature Type:	gene_model
Chromosome:	Gm20
Start:	21243219
stop:	21245809
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g15440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60580	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:24354298-24356706 FORWARD LENGTH=487	SoyBase	E_val: 6.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PTHR23012:SF38	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_I7AYF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING/U-box domain-containing protein n=1 Tax=Phaseolus vulgaris RepID=I7AYF3_PHAVU	SoyBase	E_val: 3.00E-118	ISS
UniRef100_UPI000233DCBC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DCBC related cluster n=1 Tax=unknown RepID=UPI000233DCBC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g15440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g15440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g064600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g15440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g15440

Limit To All Plant Sequences

>Glyma20g15440.3   sequence type=transcript   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCATTTTCTTTCTTTTTATTTATTTCCTATCAAAGGCAAGAGAGATTTGTGGCAGAAGTGAGAATATGGTAAAGGTGACAAGTTAGCGGGTGACAATAATGGCCGTAGCATCAATCCTTAAATAGTTTTTTTCTTCTTCGGAGCAATTCTAACTAAAACAGTTAATTCTACCAAAATCATCTAATTTCATTTATTTAAATATATTCCAAACTTCAATCCACTCACATTGTTCATGCAACCGTTATTCATTTTTCTTTCCTTTTCTTTTTACTAACATCATTATTCTACTTTGTTGTATCTGAGCTGCTGAACTTCAAAGTGTGGCAGCAGATCCTGCTCTTCTTCTTCACCATCAGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCGTTGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATGGTCCTATATTGATATCAAGTCCAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCATCAAGTCCACTATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGTTTAA

>Glyma20g15440.4   sequence type=transcript   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTCTTCAGCCTAAATGGGTTTCATTTGGTTTGAGCTGTGTAGGGACTTGGATAATGCAAAGTTCAATTTTTTACCATATGGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCGTTGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATGGTCCTATATTGATATCAAGTCCAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCATCAAGTCCACTATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGTTTAA

Coding sequences of Glyma20g15440

Limit To All Plant Sequences

>Glyma20g15440.2   sequence type=CDS   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACGCAGCTGCTGAACTTCAAAGTGTGGCAGCAGATCCTGCTCTTCTTCTTCACCATCAGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCGTTGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATGGTCCTATATTGATATCAAGTCCAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCATCAAGTCCACTATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGTTTAA

>Glyma20g15440.3   sequence type=CDS   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGTTTAA

>Glyma20g15440.4   sequence type=CDS   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGCAAGTTTAA

Predicted protein sequences of Glyma20g15440

Limit To All Plant Sequences

>Glyma20g15440.2   sequence type=predicted peptide   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNAAAELQSVAADPALLLHHQTCAGNGIGDSTSLIPESSRRPSLSSLQIPALSVENALSSFNKTDGPILISSPGSSRGLPPRPNSARVIKSTMKTLLSERSFRAKNSSMDSERTVLIIPDGSPSDGPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTANSGPENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGSISADNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKITNPQTVTRQPLNAPEPQQREVTSYRQV*

>Glyma20g15440.3   sequence type=predicted peptide   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTLLSERSFRAKNSSMDSERTVLIIPDGSPSDGPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTANSGPENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGSISADNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKITNPQTVTRQPLNAPEPQQREVTSYRQV*

>Glyma20g15440.4   sequence type=predicted peptide   gene model=Glyma20g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTLLSERSFRAKNSSMDSERTVLIIPDGSPSDGPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTANSGPENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGSISADNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKITNPQTVTRQPLNAPEPQQREVTSYRQV*

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