SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22160 | AT | Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr3:7818148-7818726 REVERSE LENGTH=192 | SoyBase | E_val: 3.00E-13 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05678 | PFAM | VQ motif | JGI | ISS | |
| UniRef100_I1NE88 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE88_SOYBN | SoyBase | E_val: 1.00E-163 | ISS |
| UniRef100_I6ZTV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Phaseolus vulgaris RepID=I6ZTV0_PHAVU | SoyBase | E_val: 6.00E-12 | ISS |
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Glyma20g15230 not represented in the dataset |
Glyma20g15230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g064500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g15230.1 sequence type=CDS gene model=Glyma20g15230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCAAACCATGTCAGGCCCAAATGACAGCTGGCTCCAATTCTACAACCAAAATTCCACACCTTCAATCCCTGACTTCACCGTGAGTACTGCTAATGTTACCACTACTACTATCGTTGCGGCCACGAGTCCTTCACAGGACATGTTGAATTCGAGTTCATCAGGCCCGACCCATTTAAGCCCGGAAGGGCGCGTGGCGAAGCCCACCCGCCGTCGCTCCCGGGCCTCGCGGCGAACTCCGACCACTCTGCTAAACACGGACACCACAAACTTCCGGGCCATGGTCCAACAATTCACCGGAGGCCCGAGTGCACCATATGCATCAAACCCATCATTGGCACCACATGTTTTGCCAAACCTCATGGGCTTTGGGTTCCCCTCACGCCCTGTTCCGAGCCCAACCACCCTCGTCATGACGTCATCACCCCCTATATCCTACCTTCAACAACAACACATGTTTCAGCAGCAAAATCAACAGTACAATTTGTATAGTACTGGTGGTGGTGGCACACAAGGTGGTGGAGACAGCAACAACAACAGAATGTTTTTTCAGAGACTAAGTAACAACAACGTTAACCCTATAATGAGTCTTCCAACAAGCAATGTTGTTGTTAGCAATAATAACAACCGTGATGGTGATGGTGGGGCTGTGAATACGCATCATGGACGCTTCCTCCCGAACACTTCTTCTTCTTCTTGA
>Glyma20g15230.1 sequence type=predicted peptide gene model=Glyma20g15230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQTMSGPNDSWLQFYNQNSTPSIPDFTVSTANVTTTTIVAATSPSQDMLNSSSSGPTHLSPEGRVAKPTRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPYASNPSLAPHVLPNLMGFGFPSRPVPSPTTLVMTSSPPISYLQQQHMFQQQNQQYNLYSTGGGGTQGGGDSNNNRMFFQRLSNNNVNPIMSLPTSNVVVSNNNNRDGDGGAVNTHHGRFLPNTSSSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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