Glyma20g14220 - SoyBase

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Report for Sequence Feature Glyma20g14220

Feature Type:	gene_model
Chromosome:	Gm20
Start:	19509436
stop:	19512925
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g14220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48160	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) \| chr5:19528019-19529820 REVERSE LENGTH=574	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010071	GO-bp	Annotation by Michelle Graham. GO Biological Process: root meristem specification	SoyBase	N/A	ISS
GO:0010078	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0010492	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity	SoyBase	N/A	ISS
GO:0046740	GO-bp	Annotation by Michelle Graham. GO Biological Process: spread of virus in host, cell to cell	SoyBase	N/A	ISS
GO:0080022	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
PTHR21736	Panther	VERNALIZATION-INSENSITIVE PROTEIN 3	JGI		ISS
PTHR21736:SF14	Panther	MLP3.23 PROTEIN	JGI		ISS
PF07227	PFAM	Protein of unknown function (DUF1423)	JGI		ISS
UniRef100_B0ZZ79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potyvirus VPg interacting protein n=1 Tax=Arachis hypogaea RepID=B0ZZ79_ARAHY	SoyBase	E_val: 0	ISS
UniRef100_I1NE78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE78_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g14220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g14220 not represented in the dataset	Glyma20g14220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g14220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g059100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g14220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g14220

Limit To All Plant Sequences

>Glyma20g14220.4   sequence type=transcript   gene model=Glyma20g14220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAAAGAAGACAAAAGTAGAAATGGAAGGGATATCACAATTACAAATTTACAACTGTGGAGAACCGGCTGAACCGGTCACCCATGGGCGTTGAAAAACACGGCTTCGTGTTCCTGTTGTCGTTTTGGGTTTTCCTCTTTCGCAGCTCAACACAAAGCCCCATCGTCTGTTCTCTCTCCGTACTTCATTCAGGCACATCATCTTCTTCTATAACATTAACCCAGGGTCGTCTCCAAAAATGCTACCTCTGCGTCCACAAGCACAAGTTGGAGGACTACAAACATCGCTGTCTCTGGTTTCCTCAGACCCTCTCCTGTCTCCTGATGAACCTAGATCAAACTCCAACAATCTCCATGAATCTCCGGCTGAAAGTGCAAGTTCTCAGGAAACTTGGCCTACTGCTGATGCAGCTGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGGTTAATTGCCTTGAGCAGAAAGTGATTCATCGTGTTTCTAGTTCAGACAAAGTTACTCTTCAGGATGTTGCTAGAGAAAGTGTTTGTATGATATGTGAAAAAATGCATCATCTACCTGAGGAATATCTAGAAGAGCTAAAGAATGGACTGCGAAGTATCCTTGAGGGAGGGAATGGTTCGCAGCACAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACACCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGCGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCGTTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGGAGCAGGACTGAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCGTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGACCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTTAAGGAAAAATTTAAAAGTAAAAAAATGGATTCAAAAGCTGTCTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAATGCCTGGAAAATGGAGAAAGTGGAACGTTGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGAACATGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAAGAAGAATTTACTAGCAACTACTTGAAACAACGTTTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTATGAGAAGATCAAATTGCAAGAGAGTTCTCGCGCTTCGCAGAGCAGTAGTGGTGGTGACCCTTCTCAGATGCTGATCTATTCCAAAATCCACGATCTACTTTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGAGAGTCCATTGTGTTTGTAATGCCAATTATGTTCCCTGTCATAGCTAAGTCATTCCCTTTGAACAATTTAGGATGAGCCACTTTTATGGCAATGTTATCATCATTTTCATCAATTTTATCTGCTTTTTGTACAAGGAGATATTGGAAAAAGCTTCAATATATGTTTGAAACTAGGCTTGTTGTAAGCATTATTAATATGTTTTTTGTAAGGAATTGTCGACTGTTGCATAACTTGTGGCTACTGGTAAGTTGAGTTAGATGTTTGGCAGTGTGATAAGTTTCTCGATAACTACTTATA

Coding sequences of Glyma20g14220

Limit To All Plant Sequences

>Glyma20g14220.3   sequence type=CDS   gene model=Glyma20g14220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTCTGCGTCCACAAGCACAAGTTGGAGGACTACAAACATCGCTGTCTCTGGTTTCCTCAGACCCTCTCCTGTCTCCTGATGAACCTAGATCAAACTCCAACAATCTCCATGAATCTCCGGCTGAAAGTGCAAGTTCTCAGGAAACTTGGCCTACTGCTGATGCAGCTGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGGTTAATTGCCTTGAGCAGAAAGTGATTCATCGTGTTTCTAGTTCAGACAAAGTTACTCTTCAGGATGTTGCTAGAGAAAGTGTTTGTATGATATGTGAAAAAATGCATCATCTACCTGAGGAATATCTAGAAGAGCTAAAGAATGGACTGCGAAGTATCCTTGAGGGAGGGAATGGTTCGCAGCACAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACACCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGCGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCGTTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGGAGCAGGACTGAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCGTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGACCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTTAAGGAAAAATTTAAAAGTAAAAAAATGGATTCAAAAGCTGTCTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAATGCCTGGAAAATGGAGAAAGTGGAACGTTGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGAACATGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAAGAAGAATTTACTAGCAACTACTTGAAACAACGTTTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTATGAGAAGATCAAATTGCAAGAGAGTTCTCGCGCTTCGCAGAGCAGTAGTGGTGGTGACCCTTCTCAGATGCTGATCTATTCCAAAATCCACGATCTACTTTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA

>Glyma20g14220.4   sequence type=CDS   gene model=Glyma20g14220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTCTGCGTCCACAAGCACAAGTTGGAGGACTACAAACATCGCTGTCTCTGGTTTCCTCAGACCCTCTCCTGTCTCCTGATGAACCTAGATCAAACTCCAACAATCTCCATGAATCTCCGGCTGAAAGTGCAAGTTCTCAGGAAACTTGGCCTACTGCTGATGCAGCTGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGGTTAATTGCCTTGAGCAGAAAGTGATTCATCGTGTTTCTAGTTCAGACAAAGTTACTCTTCAGGATGTTGCTAGAGAAAGTGTTTGTATGATATGTGAAAAAATGCATCATCTACCTGAGGAATATCTAGAAGAGCTAAAGAATGGACTGCGAAGTATCCTTGAGGGAGGGAATGGTTCGCAGCACAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACACCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGCGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCGTTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGGAGCAGGACTGAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCGTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGACCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTTAAGGAAAAATTTAAAAGTAAAAAAATGGATTCAAAAGCTGTCTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAATGCCTGGAAAATGGAGAAAGTGGAACGTTGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGAACATGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAAGAAGAATTTACTAGCAACTACTTGAAACAACGTTTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTATGAGAAGATCAAATTGCAAGAGAGTTCTCGCGCTTCGCAGAGCAGTAGTGGTGGTGACCCTTCTCAGATGCTGATCTATTCCAAAATCCACGATCTACTTTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA

Predicted protein sequences of Glyma20g14220

Limit To All Plant Sequences

>Glyma20g14220.3   sequence type=predicted peptide   gene model=Glyma20g14220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLRPQAQVGGLQTSLSLVSSDPLLSPDEPRSNSNNLHESPAESASSQETWPTADAAAAKKMENGKAEVNCLEQKVIHRVSSSDKVTLQDVARESVCMICEKMHHLPEEYLEELKNGLRSILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAVREQLICMGPSSKSGAGLSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKFKSKKMDSKAVCRAILMFFQELEVDSAKCLENGESGTLIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALEACEHELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLIYSKIHDLLYSVPSKADSQGNERHPFRTNP*

>Glyma20g14220.4   sequence type=predicted peptide   gene model=Glyma20g14220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLRPQAQVGGLQTSLSLVSSDPLLSPDEPRSNSNNLHESPAESASSQETWPTADAAAAKKMENGKAEVNCLEQKVIHRVSSSDKVTLQDVARESVCMICEKMHHLPEEYLEELKNGLRSILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAVREQLICMGPSSKSGAGLSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKFKSKKMDSKAVCRAILMFFQELEVDSAKCLENGESGTLIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALEACEHELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLIYSKIHDLLYSVPSKADSQGNERHPFRTNP*

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