SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04842 | AT | Annotation by Michelle Graham. TAIR10: threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative | chr2:1698466-1701271 REVERSE LENGTH=650 | SoyBase | E_val: 1.00E-102 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006435 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: threonine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR11451 | Panther | TRNA SYNTHETASE-RELATED | JGI | ISS | |
| PTHR11451:SF5 | Panther | THREONYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | ISS | |
| UniRef100_F4IFC5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Threonine--tRNA ligase 1 n=1 Tax=Arabidopsis thaliana RepID=F4IFC5_ARATH | SoyBase | E_val: 6.00E-100 | ISS |
| UniRef100_I1NE74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NE74_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g13740 not represented in the dataset |
Glyma20g13740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g13740.1 sequence type=CDS gene model=Glyma20g13740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACGCCCCTCAATCACCACCACCCTCGTCGTTGCCGTCGACCCTTCGGTTTCTGTCAACCCTAACCCTAACCCCAATCAGCTCGTTCTCCCTTCCATCGAATCATCTGAGAGGCTTCACAGAATCCGCCACACGCATACAATGTGCGCATGTGATTGCAATGGCAATGACTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGGCTTGGATTGAAAATGGCGTACTACGGGAATGCATTTGTAATAAATTTGCCACTCGTAGAGAAGAAGTGATGAATGGTGGGACCTATGTGCTGGACCTCATGTTGAATCTACTGGAAATATCAATAAGAAAGCGGTTGAACTTGGATGAAAGGAAGCCAATGTTGCAAAGGATATACGGTACTGCATGGGAGAATGCAGAGCAGTTGAAGGCTTACCTTCACTTCAAAGGGGAAGCTAAGCATCGAGATCACAGATGCCTAGGGCAAGATCTTGATTTGTTTTCTATGCAGGATGATGCTGGTAGGGGTTTAGTTTTCTGGCACCCAAAGGGTGCTATGCTGATCTTTGGAAGATCATTGGTCATTTGGACTTCTACAAAGAGAATGTTTGATCAGATGAGCTTTCAGGATAATATTTACCAGCTTCGGCCAATGAATTGTCCTTATCATATTTTGAATTATGAACTGTTTATAGATATGAACTATCTGGAAGTTTATATGGCCTTTTCCGTGTTAGATGTTTCACACAGTGTGCCCTGTCTCACTAGTAAGGTTGTGTACATTTCACTGTCCTGGAGCCCACAATTGTGCAAGCCTCATGCACTGGGTCACATTTTTTTCCCTACTCTTTTTGAATCATGGCATCAGGATGATGCACATATATTTTGTTTAGATGACCAGATTAAAGACGAGATTAGGGGTGTCCTAGATCTTATAGAAGAAATATTATTGCAATTTGGTTTTGACAAATATGAAGTAAATTTATCTACAAGGCTTGAAAAGGCTATGGGAGATGATGATATATGGGAAAAAGCTACCACTGCTTTAAAAGATGCTTTGGATGATAAAGGTTGGACCTATCCAAATGATGATGGAGGAGGTGCCTTTTATGGGCCAAAGATTGATATCAAGATTGAGGATGCTCTTGTTATCCAAATGGGGCCATGTATTGTAGTTTTTGTGACCATGTCAGGAATATATCCTTGCTTCCCCTGGCGCTTGCTCTGCTCATTTAGAACTAGGTACATTTGGCCTCTACATTGTCCATGCTTTAAGCCCAAAGAATCTTGCATGAGGGTTGAAACTATACACGTTGATTTTAATCTGCCACAGCGTTTTGACATCACATAT
>Glyma20g13740.1 sequence type=predicted peptide gene model=Glyma20g13740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high NAPQSPPPSSLPSTLRFLSTLTLTPISSFSLPSNHLRGFTESATRIQCAHVIAMAMTVQKLYPDAKVTIGAWIENGVLRECICNKFATRREEVMNGGTYVLDLMLNLLEISIRKRLNLDERKPMLQRIYGTAWENAEQLKAYLHFKGEAKHRDHRCLGQDLDLFSMQDDAGRGLVFWHPKGAMLIFGRSLVIWTSTKRMFDQMSFQDNIYQLRPMNCPYHILNYELFIDMNYLEVYMAFSVLDVSHSVPCLTSKVVYISLSWSPQLCKPHALGHIFFPTLFESWHQDDAHIFCLDDQIKDEIRGVLDLIEEILLQFGFDKYEVNLSTRLEKAMGDDDIWEKATTALKDALDDKGWTYPNDDGGGAFYGPKIDIKIEDALVIQMGPCIVVFVTMSGIYPCFPWRLLCSFRTRYIWPLHCPCFKPKESCMRVETIHVDFNLPQRFDITY
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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