SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g12510

Feature Type:gene_model
Chromosome:Gm20
Start:17767845
stop:17774324
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g12510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23310AT Annotation by Michelle Graham. TAIR10: Fe superoxide dismutase 3 | chr5:7850624-7852241 FORWARD LENGTH=263 SoyBaseE_val: 6.00E-134ISS
GO:0019430GO-bp Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009295GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoid SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0042644GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast nucleoid SoyBaseN/AISS
GO:0042646GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid nucleoid SoyBaseN/AISS
GO:0004784GO-mf Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0876 KOG Manganese superoxide dismutase JGI ISS
PTHR11404Panther SUPEROXIDE DISMUTASE 2 JGI ISS
PTHR11404:SF8Panther IRON/MANGANESE SUPEROXIDE DISMUTASE JGI ISS
PF00081PFAM Iron/manganese superoxide dismutases, alpha-hairpin domain JGI ISS
PF02777PFAM Iron/manganese superoxide dismutases, C-terminal domain JGI ISS
UniRef100_I1NE68UniRef Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1NE68_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1NE68UniRef Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1NE68_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g12510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g12510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g050800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g12510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g12510
>Glyma20g12510.1   sequence type=CDS   gene model=Glyma20g12510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTGTTACTTCAATCCTATCCCTACTAGTTCTCATCTCATTTTGGCTGACTTATCTAGACAGTTCAAGATTCCCAAGCTTCTTCACAGGAAAAAGAGGTTTGATGGCTCACCTAGATCCTCAAAAATCGCTGCATTTTATGGCTTGACGACCCCTCCTTATGAACTTGATGCCTTAGAGCCTTATATGAGCAAGAGGACAATTGATATGCACTGGGGTGAATATCATCAGAATTTTATAGAAGGTTTGAACAAACAGCTGGAGAAGGATGATATACTGTATGGTTACACTTTGGATGAACTAGTCAAAGTGACATACAACAATGGGAATCCTCTGCCTGAATTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCAGGAGGGGGTGATATGCCCAAACTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACAAATTTTAGGGAAAAGTTTATTGGAGCTGCTCTCTCATTATTTGGATCTGGCTGGGTTTGGCTAGTTTTGAAGAGAGAAGAGAAACGACTGGAGATAGTCAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGATGACATACCAATTATCAATTTGGATTTGTGGGAGCATGCATATTATCTGGATTACAGGAATGATAGAGCAAAGTATGTGGATGTATTTATGAACCACCTTGTGTCTTGGGATGCTGCAATGGGCCGATTGACAAGAGCAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGA
Predicted protein sequences of Glyma20g12510
>Glyma20g12510.1   sequence type=predicted peptide   gene model=Glyma20g12510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCYFNPIPTSSHLILADLSRQFKIPKLLHRKKRFDGSPRSSKIAAFYGLTTPPYELDALEPYMSKRTIDMHWGEYHQNFIEGLNKQLEKDDILYGYTLDELVKVTYNNGNPLPEFNNAAEVWNHDFFWESMQPGGGDMPKLGLLQQIEKDFGSFTNFREKFIGAALSLFGSGWVWLVLKREEKRLEIVKTSNAICPIVWDDIPIINLDLWEHAYYLDYRNDRAKYVDVFMNHLVSWDAAMGRLTRAEAFVNLGEPKIPVA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo