Glyma20g12290 - SoyBase

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Report for Sequence Feature Glyma20g12290

Feature Type:	gene_model
Chromosome:	Gm20
Start:	17523002
stop:	17530137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g12290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27090	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr2:11567691-11570345 REVERSE LENGTH=743	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_I1NE67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE67_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP114 (Fragment) n=1 Tax=Glycine max RepID=Q0GPD1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g12290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g12290 not represented in the dataset	Glyma20g12290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g12290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g051100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g12290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g12290

Limit To All Plant Sequences

>Glyma20g12290.3   sequence type=transcript   gene model=Glyma20g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCCTTTTTTATGCCTTTTGCATGGAAACATCTACGGGCTGATCGAGATTCGTCCCGCACTTTCACTTTCTCTCTCTACATCTCTTTCTCTCTCTAGAAAAAAAAAAGTTTCCTTCTCCTTAACGATTTTCTCTGACTCAGCGACTATATTCCAAGTTCTTGCCGTGCACCACTGATTCACTGCACCTTCGATTGAAGTTATTCACCAAAATTTGCATAAGGGGAAAACTAAGGCTAGGTTTGGGCTAATGGGGGCCTCAAGCTCCAAAATGGATGATGATGATAAGGCACTCCAGCTTTGCCGTGAAAGGAAGAAATTTGTTAAGCAAGCACTTGATGGGCGTTGCTCTTTTGCAGCTTCTCATGTTTCATATGTCCAGTCACTTAAAAGTACAGGAACAGCTTTGAGAAAATTCTTGGAACCTGAAGCCCCAATTGAATCTTCCTTAGACACTTCCACCAATGCCACACCAGAGCAGCCACTTGACAAAACCCTGTCCCAGTTCTCACTATCTTCATCTGTGTCCCGACGCACTGATGCAGCTGAAACATTTTCTCCAACTCCCTCTCCTCCTAGCTCTAGTAAGTTCCAAGCACATCATATGAAATTTAGCAGTAGTTCTTCTAAAAAGGTTGAAGAAAAACCACCTGTACCCATTATAGGAACCGTAACATCATCAGGTACTCCACATAATGTCGTTCCTCATCCCACTGATAAGTCAGCATTTGAAGTTTCTCCTCTTCCCGTTGAAACTCCACCATGGGATTTTTTTGGTCTCTTTCATCCCATTGATCATCAATTTTCTTTTCAAGAAGGGAAGGTCATGCACCAAGATATGGTGGCGAATGCTGATGATATATCACGACTTAGGGAGGAGGAAGGAATTCCTGAATTAGAAGATGATGAGAAGGTTTCTTCTCATGAAAGGGAAGACTCTACGGACTCTGAAGATGAATTTGATGATGAGCCTGCCACAGATACTCTAGTCCAAAGATTTGAAAATTTTAATAGAGTTAATGATCATATTAAACCCAATGACTTATCTGCCACAGATAAACATCCGAAGGGGGATTCTGCTTCTGAAGTTGAACTTGGGAATGGGGAGAAAGGGAATTCTCCTGTTGTATCACCATTAAAGACAGCTTCTACAGAAGTTTCGCTTCTAACTGTAATAGATAAATCGAAGGAGAAAGAAAATCACAGGGAAAAAGTTGTTCCTAAGGATTTCTTTTCAAGCATGAAAGATATAGAATTCCTCTTTGTTAAAGCCTCTGAATCTGGTAAAGAGGTTCCAAAAATGCTTGAAGCAAATAAGTCACACTTTCGTCCTCTATTTCCGGCCAAAGAAAATCGTTTGGTGGCACCCTCATTTTTGAAGGCATGTTTCTCATGTGGGGAAGACCCTAGTAAACTTCCTGAAGAACCTGCTCAAAACTCTGTTAAGTACTTAACTTGGCATAGGACAATGTCATCTCGATCCTATTCATCCGCAAACCCTCCGGGAGCAAACTCAAAAGCTGATGTAGATGATGTTACAAATAATCTCTTTGATAATTTCTGCATGATCTCTGGAAGTCATGCATCAACCTTGGATAGATTATATGCATGGGAAAGAAAGCTCTATGACGAAGTGAAGGCTAGTGATTTGATCAGAAAGGAATATGACATGAAGTGCAAATTCTTACGGAATCTGGAATCAAAAGGAGAAAAGACTTCTAGAATTGATAAAATGCGTGCTGTAGTCAAGGATCTGCATTCAAGAATTAGAATTGCAATTCTTAGGATAGACTCTATATCTAAGAGGATTGAGGAATTGCGGGACAAAGAGCTTACGCCTCAACTTGAGGAGTTGATTGACGGGTTAAGTCGGATGTGGGAAGTGATGTTTGAGTGCCACAAGCTGCAGTTTCAGACAATGTCAACTGTGTATAACAACAGCCATGCTGGAATTGCTGCCACACACTCTGAATTACGTAGGCAAATTACTTCCTATCTCGAAAGCGAGCTCCATTATCTATCCTCTAGTTTTACCAAGTGGATTGGAGCTCAGAAGTTCTATCTGGAGGCCATAAATGGATGGCTGCACAAATGTGTTTCTCTTAAACAAAAACCAGGAAAGAAAAAGAGACCCCAACGTCCACTCCTAAGAATGTATGGTCCTCCAATATATGCCACCTGTGAAATCTGGTTGGAAAAGCTTGGCGAATTACCCGTCCAGGATGTTGTGGATTCTATGAAGAGTTTAGCGGGTGAAATTGCCCAGTTCTTACCGCGTCAAGAGAAGAACCAGGGTAAAGGTGCAAATCACTCCCATTTAACAACTTGGAGTGCTAATAATATCCGTAGCGAATCGTCGGATAATCTATTGAGAGATGGGACATTAGAGGACTGGGATTCAGGTTTTGATCAATTTCGTGCAAGCTTTCTTGGATTTCTCGCCCAATTAAATAATTTTGCCGGGTCTTCGATCATGATGTACACAGATCTTAGACAAGCCATTCAGATTGCCAAGAAGAATTATCATCATAGATCTAATTCTCAGGCTCAAGATGGTCAGTGGAATTCTCTGTCTCAAGATGATAATTCCATGTCTCAATCTTGAGTTGCCAATTCTGAAAAGAAAATCCCAAAACAATAATTGAGTTTCATAGGTTGCATTAAACATGGTGGAGTTGTTGCAGCATTACAGGTTTATGTTGAACTCATGAATGTTGAGTTTCATACAAGTCCATTGGATGTGGCATTTGTACATGAAAGAAAGAAAAAGGAAGGAAGAAAGTATATTTACAGGATGAGCATACTTATATGATAGTTTCATCATTTCAATAATGCAAGACGGTGGTTACAGGTTAGGCAAAGCTGTAATTACTAGGTTCTGTTAAAGTGCTACTATGCATGCTAAGAGAAGGAACTTGTGAAGTGTCATTTTTGTAAACAAAAAGTGTCATATATAGTACTTTTACTTGATTTTCTTTACGGACGTAATTGTTTGAATTTATGATATGCATGGGTGTAGGTTAAGTTTTAG

Coding sequences of Glyma20g12290

Limit To All Plant Sequences

>Glyma20g12290.2   sequence type=CDS   gene model=Glyma20g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGCCTCAAGCTCCAAAATGGATGATGATGATAAGGCACTCCAGCTTTGCCGTGAAAGGAAGAAATTTGTTAAGCAAGCACTTGATGGGCGTTGCTCTTTTGCAGCTTCTCATGTTTCATATGTCCAGTCACTTAAAAGTACAGGAACAGCTTTGAGAAAATTCTTGGAACCTGAAGCCCCAATTGAATCTTCCTTAGACACTTCCACCAATGCCACACCAGAGCAGCCACTTGACAAAACCCTGTCCCAGTTCTCACTATCTTCATCTGTGTCCCGACGCACTGATGCAGCTGAAACATTTTCTCCAACTCCCTCTCCTCCTAGCTCTAGTAAGTTCCAAGCACATCATATGAAATTTAGCAGTAGTTCTTCTAAAAAGGTTGAAGAAAAACCACCTGTACCCATTATAGGAACCGTAACATCATCAGGTACTCCACATAATGTCGTTCCTCATCCCACTGATAAGTCAGCATTTGAAGTTTCTCCTCTTCCCGTTGAAACTCCACCATGGGATTTTTTTGGTCTCTTTCATCCCATTGATCATCAATTTTCTTTTCAAGAAGGGAAGGTCATGCACCAAGATATGGTGGCGAATGCTGATGATATATCACGACTTAGGGAGGAGGAAGGAATTCCTGAATTAGAAGATGATGAGAAGGTTTCTTCTCATGAAAGGGAAGACTCTACGGACTCTGAAGATGAATTTGATGATGAGCCTGCCACAGATACTCTAGTCCAAAGATTTGAAAATTTTAATAGAGTTAATGATCATATTAAACCCAATGACTTATCTGCCACAGATAAACATCCGAAGGGGGATTCTGCTTCTGAAGTTGAACTTGGGAATGGGGAGAAAGGGAATTCTCCTGTTGTATCACCATTAAAGACAGCTTCTACAGAAGTTTCGCTTCTAACTGTAATAGATAAATCGAAGGAGAAAGAAAATCACAGGGAAAAAGTTGTTCCTAAGGATTTCTTTTCAAGCATGAAAGATATAGAATTCCTCTTTGTTAAAGCCTCTGAATCTGGTAAAGAGGTTCCAAAAATGCTTGAAGCAAATAAGTCACACTTTCGTCCTCTATTTCCGGCCAAAGAAAATCGTTTGGTGGCACCCTCATTTTTGAAGGCATGTTTCTCATGTGGGGAAGACCCTAGTAAACTTCCTGAAGAACCTGCTCAAAACTCTGTTAAGTACTTAACTTGGCATAGGACAATGTCATCTCGATCCTATTCATCCGCAAACCCTCCGGGAGCAAACTCAAAAGCTGATGTAGATGATGTTACAAATAATCTCTTTGATAATTTCTGCATGATCTCTGGAAGTCATGCATCAACCTTGGATAGATTATATGCATGGGAAAGAAAGCTCTATGACGAAGTGAAGGCTAGTGATTTGATCAGAAAGGAATATGACATGAAGTGCAAATTCTTACGGAATCTGGAATCAAAAGGAGAAAAGACTTCTAGAATTGATAAAATGCGTGCTGTAGTCAAGGATCTGCATTCAAGAATTAGAATTGCAATTCTTAGGATAGACTCTATATCTAAGAGGATTGAGGAATTGCGGGACAAAGAGCTTACGCCTCAACTTGAGGAGTTGATTGACGGGTTAAGTCGGATGTGGGAAGTGATGTTTGAGTGCCACAAGCTGCAGTTTCAGACAATGTCAACTGTGTATAACAACAGCCATGCTGGAATTGCTGCCACACACTCTGAATTACGTAGGCAAATTACTTCCTATCTCGAAAGCGAGCTCCATTATCTATCCTCTAGTTTTACCAAGTGGATTGGAGCTCAGAAGTTCTATCTGGAGGCCATAAATGGATGGCTGCACAAATGTGTTTCTCTTAAACAAAAACCAGGAAAGAAAAAGAGACCCCAACGTCCACTCCTAAGAATGTATGGTCCTCCAATATATGCCACCTGTGAAATCTGGTTGGAAAAGCTTGGCGAATTACCCGTCCAGGATGTTGTGGATTCTATGAAGAGTTTAGCGGGTGAAATTGCCCAGTTCTTACCGCGTCAAGAGAAGAACCAGGGTAAAGGTGCAAATCACTCCCATTTAACAACTTGGAGTGCTAATAATATCCGTAGCGAATCGTCGGATAATCTATTGAGAGATGGGACATTAGAGGACTGGGATTCAGGTTTTGATCAATTTCGTGCAAGCTTTCTTGGATTTCTCGCCCAATTAAATAATTTTGCCGGGTCTTCGATCATGATGTACACAGATCTTAGACAAGCCATTCAGATTGCCAAGAAGAATTATCATCATAGATCTAATTCTCAGGCTCAAGATGGTCAGTGGAATTCTCTGTCTCAAGATGATAATTCCATGTCTCAATCTTGA

>Glyma20g12290.3   sequence type=CDS   gene model=Glyma20g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGCCTCAAGCTCCAAAATGGATGATGATGATAAGGCACTCCAGCTTTGCCGTGAAAGGAAGAAATTTGTTAAGCAAGCACTTGATGGGCGTTGCTCTTTTGCAGCTTCTCATGTTTCATATGTCCAGTCACTTAAAAGTACAGGAACAGCTTTGAGAAAATTCTTGGAACCTGAAGCCCCAATTGAATCTTCCTTAGACACTTCCACCAATGCCACACCAGAGCAGCCACTTGACAAAACCCTGTCCCAGTTCTCACTATCTTCATCTGTGTCCCGACGCACTGATGCAGCTGAAACATTTTCTCCAACTCCCTCTCCTCCTAGCTCTAGTAAGTTCCAAGCACATCATATGAAATTTAGCAGTAGTTCTTCTAAAAAGGTTGAAGAAAAACCACCTGTACCCATTATAGGAACCGTAACATCATCAGGTACTCCACATAATGTCGTTCCTCATCCCACTGATAAGTCAGCATTTGAAGTTTCTCCTCTTCCCGTTGAAACTCCACCATGGGATTTTTTTGGTCTCTTTCATCCCATTGATCATCAATTTTCTTTTCAAGAAGGGAAGGTCATGCACCAAGATATGGTGGCGAATGCTGATGATATATCACGACTTAGGGAGGAGGAAGGAATTCCTGAATTAGAAGATGATGAGAAGGTTTCTTCTCATGAAAGGGAAGACTCTACGGACTCTGAAGATGAATTTGATGATGAGCCTGCCACAGATACTCTAGTCCAAAGATTTGAAAATTTTAATAGAGTTAATGATCATATTAAACCCAATGACTTATCTGCCACAGATAAACATCCGAAGGGGGATTCTGCTTCTGAAGTTGAACTTGGGAATGGGGAGAAAGGGAATTCTCCTGTTGTATCACCATTAAAGACAGCTTCTACAGAAGTTTCGCTTCTAACTGTAATAGATAAATCGAAGGAGAAAGAAAATCACAGGGAAAAAGTTGTTCCTAAGGATTTCTTTTCAAGCATGAAAGATATAGAATTCCTCTTTGTTAAAGCCTCTGAATCTGGTAAAGAGGTTCCAAAAATGCTTGAAGCAAATAAGTCACACTTTCGTCCTCTATTTCCGGCCAAAGAAAATCGTTTGGTGGCACCCTCATTTTTGAAGGCATGTTTCTCATGTGGGGAAGACCCTAGTAAACTTCCTGAAGAACCTGCTCAAAACTCTGTTAAGTACTTAACTTGGCATAGGACAATGTCATCTCGATCCTATTCATCCGCAAACCCTCCGGGAGCAAACTCAAAAGCTGATGTAGATGATGTTACAAATAATCTCTTTGATAATTTCTGCATGATCTCTGGAAGTCATGCATCAACCTTGGATAGATTATATGCATGGGAAAGAAAGCTCTATGACGAAGTGAAGGCTAGTGATTTGATCAGAAAGGAATATGACATGAAGTGCAAATTCTTACGGAATCTGGAATCAAAAGGAGAAAAGACTTCTAGAATTGATAAAATGCGTGCTGTAGTCAAGGATCTGCATTCAAGAATTAGAATTGCAATTCTTAGGATAGACTCTATATCTAAGAGGATTGAGGAATTGCGGGACAAAGAGCTTACGCCTCAACTTGAGGAGTTGATTGACGGGTTAAGTCGGATGTGGGAAGTGATGTTTGAGTGCCACAAGCTGCAGTTTCAGACAATGTCAACTGTGTATAACAACAGCCATGCTGGAATTGCTGCCACACACTCTGAATTACGTAGGCAAATTACTTCCTATCTCGAAAGCGAGCTCCATTATCTATCCTCTAGTTTTACCAAGTGGATTGGAGCTCAGAAGTTCTATCTGGAGGCCATAAATGGATGGCTGCACAAATGTGTTTCTCTTAAACAAAAACCAGGAAAGAAAAAGAGACCCCAACGTCCACTCCTAAGAATGTATGGTCCTCCAATATATGCCACCTGTGAAATCTGGTTGGAAAAGCTTGGCGAATTACCCGTCCAGGATGTTGTGGATTCTATGAAGAGTTTAGCGGGTGAAATTGCCCAGTTCTTACCGCGTCAAGAGAAGAACCAGGGTAAAGGTGCAAATCACTCCCATTTAACAACTTGGAGTGCTAATAATATCCGTAGCGAATCGTCGGATAATCTATTGAGAGATGGGACATTAGAGGACTGGGATTCAGGTTTTGATCAATTTCGTGCAAGCTTTCTTGGATTTCTCGCCCAATTAAATAATTTTGCCGGGTCTTCGATCATGATGTACACAGATCTTAGACAAGCCATTCAGATTGCCAAGAAGAATTATCATCATAGATCTAATTCTCAGGCTCAAGATGGTCAGTGGAATTCTCTGTCTCAAGATGATAATTCCATGTCTCAATCTTGA

Predicted protein sequences of Glyma20g12290

Limit To All Plant Sequences

>Glyma20g12290.2   sequence type=predicted peptide   gene model=Glyma20g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASSSKMDDDDKALQLCRERKKFVKQALDGRCSFAASHVSYVQSLKSTGTALRKFLEPEAPIESSLDTSTNATPEQPLDKTLSQFSLSSSVSRRTDAAETFSPTPSPPSSSKFQAHHMKFSSSSSKKVEEKPPVPIIGTVTSSGTPHNVVPHPTDKSAFEVSPLPVETPPWDFFGLFHPIDHQFSFQEGKVMHQDMVANADDISRLREEEGIPELEDDEKVSSHEREDSTDSEDEFDDEPATDTLVQRFENFNRVNDHIKPNDLSATDKHPKGDSASEVELGNGEKGNSPVVSPLKTASTEVSLLTVIDKSKEKENHREKVVPKDFFSSMKDIEFLFVKASESGKEVPKMLEANKSHFRPLFPAKENRLVAPSFLKACFSCGEDPSKLPEEPAQNSVKYLTWHRTMSSRSYSSANPPGANSKADVDDVTNNLFDNFCMISGSHASTLDRLYAWERKLYDEVKASDLIRKEYDMKCKFLRNLESKGEKTSRIDKMRAVVKDLHSRIRIAILRIDSISKRIEELRDKELTPQLEELIDGLSRMWEVMFECHKLQFQTMSTVYNNSHAGIAATHSELRRQITSYLESELHYLSSSFTKWIGAQKFYLEAINGWLHKCVSLKQKPGKKKRPQRPLLRMYGPPIYATCEIWLEKLGELPVQDVVDSMKSLAGEIAQFLPRQEKNQGKGANHSHLTTWSANNIRSESSDNLLRDGTLEDWDSGFDQFRASFLGFLAQLNNFAGSSIMMYTDLRQAIQIAKKNYHHRSNSQAQDGQWNSLSQDDNSMSQS*

>Glyma20g12290.3   sequence type=predicted peptide   gene model=Glyma20g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASSSKMDDDDKALQLCRERKKFVKQALDGRCSFAASHVSYVQSLKSTGTALRKFLEPEAPIESSLDTSTNATPEQPLDKTLSQFSLSSSVSRRTDAAETFSPTPSPPSSSKFQAHHMKFSSSSSKKVEEKPPVPIIGTVTSSGTPHNVVPHPTDKSAFEVSPLPVETPPWDFFGLFHPIDHQFSFQEGKVMHQDMVANADDISRLREEEGIPELEDDEKVSSHEREDSTDSEDEFDDEPATDTLVQRFENFNRVNDHIKPNDLSATDKHPKGDSASEVELGNGEKGNSPVVSPLKTASTEVSLLTVIDKSKEKENHREKVVPKDFFSSMKDIEFLFVKASESGKEVPKMLEANKSHFRPLFPAKENRLVAPSFLKACFSCGEDPSKLPEEPAQNSVKYLTWHRTMSSRSYSSANPPGANSKADVDDVTNNLFDNFCMISGSHASTLDRLYAWERKLYDEVKASDLIRKEYDMKCKFLRNLESKGEKTSRIDKMRAVVKDLHSRIRIAILRIDSISKRIEELRDKELTPQLEELIDGLSRMWEVMFECHKLQFQTMSTVYNNSHAGIAATHSELRRQITSYLESELHYLSSSFTKWIGAQKFYLEAINGWLHKCVSLKQKPGKKKRPQRPLLRMYGPPIYATCEIWLEKLGELPVQDVVDSMKSLAGEIAQFLPRQEKNQGKGANHSHLTTWSANNIRSESSDNLLRDGTLEDWDSGFDQFRASFLGFLAQLNNFAGSSIMMYTDLRQAIQIAKKNYHHRSNSQAQDGQWNSLSQDDNSMSQS*

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