Glyma20g12230 - SoyBase

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Report for Sequence Feature Glyma20g12230

Feature Type:	gene_model
Chromosome:	Gm20
Start:	17209500
stop:	17214632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g12230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21105	AT	Annotation by Michelle Graham. TAIR10: Plant L-ascorbate oxidase \| chr5:7172727-7177409 FORWARD LENGTH=588	SoyBase	E_val: 0	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008447	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbate oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF10	Panther	LACCASE	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_B9ZZP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ascorbate oxidase n=1 Tax=Pisum sativum RepID=B9ZZP2_PEA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DC64	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DC64 related cluster n=1 Tax=unknown RepID=UPI000233DC64	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g12230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g12230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g051600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g12230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g12230

Limit To All Plant Sequences

>Glyma20g12230.3   sequence type=transcript   gene model=Glyma20g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTGAAAGCTCTTTTTGTTTGGTGCATAATATGGTTGGGTTTGGTAGAATTGTCACTTGGAGGAAGAGTGAGACACTACAAGTTTGATGTGGAGTACATGATCAGAAAGCCAGATTGCTTGGAACACGTTGTGATGGGAATCAACGGCCAGTTTCCCGGCCCAACTATTAGGGCTGAAGTTGGTGACATTCTTGACATTGCTCTCACCAACAAGCTTTTCAGTGAGGGAACTGTTGTTCACTGGCATGGAATCAGACAGGTTGGAACTCCTTGGGCAGATGGAACTGCTTCCATCTCACAGTGTGCTATAAACCCAGGAGAAACTTATCATTACAGGTTTACAGTTGACCGGCCTGGTACATATTTCTATCATGGACACTATGGTATGCAAAGAGCAGCTGGGTTGGACAAAACGAACCGTTTTCATTACGATGGTGAATTCAACCTTCTTCTTAGTGATTTGTGGCACACAAGCTCACATGAACAAGAAGTTGGTCTCTCTACAAAACCATTAAAATGGATTGGTGAACCTCAGACTCTGCTCATCAATGGAAGAGGACAATTCAATTGTTCCCTTGCATCTAAATTCATCAACACAACCCTACCCCAATGCCATCTTAAAGGTGATGAAGAATGTGCCCCTCAGATTCTTGATGTGGAGCCAAACAAGACCTATAGAATCAGGATTGCCAGCACCACTTCCTTAGCTGCACTCAACTTAGCTATTTCGAATCACAAACTTGTTGTGGTTGAAGTTGATGGAAACTACGTTACACCATTTGCGGTTGATGACATGGACATCTACTCTGGTGAGAGCTACTCAGTGCTCCTTCACACAAACCAAAATCCAAACAAAAATTATTGGCTTTCAATTGGGGTTAGAGGAAGAAAGCCTAATACCCCACAAGGCTTGGCCATTCTAAACTATAAGACCATTTCTGCCTTAATTTTTCCAACTTCTCCACCACCCATCACACCCCTTTGGAATGATTTTGAGCATAGCAAAGCCTTCACCAAAAAAATCATTGCCAAAATGGGAACCCCACAACCTCCGGAGCATTCAGACCGCACACAATACTCCTCCTCAACACCCAAAATCGAGTTGATGGGTTTACCAAATGGTCCATTAATAATGTATCCTTAACATTGCCACCCACCCCTTACTTGGGCTCAAAATAAACAATGCCTTTGACCAAACGCCCCCACCTGTGACCTTCCAACAAGATTATCACATTTTTAACCCTCCTGTGAACCCAAATGCAACAATTGGCAATGGGGTGTACATGTTCAATCTTAATGAAGTCGTTGATGTGATATTGCAAAATGCGAACCAATTAATTGGGAATGGTAGTGAGATTCACCCTTGGCACTTGCATGGACATGACTTTTGGGTTTTGGGGTATGGAGAAGGGAAATTCAAATCGGGTGATGTGAAGAAATTCAATTTCACACAAGCACCCTTAAGGAACACCGCAGTGATATTTCCATATGGTTGGACTGCATTGAGGTTTAAGGCCGATAACCCAGGAGTTTGGGCCTTCCATTGTCACATTGAGCCTCATTTGCACATGGGAATGGGTGTGGTTTTTGCTGAGGGTGTTCACAAAGTTGGAAAAATCCCAAGAGAAGCACTAACTTGTGGTCTTACAGGAAAGAAGCTAATAGAAAACGGACGCTACTAAAACTAGCTTGCCACACTATTGATGCTTAATAGGCCTTAAGTTGCCAAGTGTATGTTTCCTTTGTCCTCTTTCTCAATTCTGTTTGTGGGGTTTGTTTTGTACTATTTTCTCTTGTAGAATTGGACCTATTATCTTATAGGGTAGTCATGTCTTCTCCTTTAAGGTAATTTATTTATTTTATTGCATTCTTGTGTAACTCATTAATTTAATTTTGAGAAATGTGTTAAGAGA

Coding sequences of Glyma20g12230

Limit To All Plant Sequences

>Glyma20g12230.2   sequence type=CDS   gene model=Glyma20g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTGAAAGCTCTTTTTGTTTGGTGCATAATATGGTTGGGTTTGGTAGAATTGTCACTTGGAGGAAGAGTGAGACACTACAAGTTTGATGTGGAGTACATGATCAGAAAGCCAGATTGCTTGGAACACGTTGTGATGGGAATCAACGGCCAGTTTCCCGGCCCAACTATTAGGGCTGAAGTTGGTGACATTCTTGACATTGCTCTCACCAACAAGCTTTTCAGTGAGGGAACTGTTGTTCACTGGCATGGAATCAGACAGGTTGGAACTCCTTGGGCAGATGGAACTGCTTCCATCTCACAGTGTGCTATAAACCCAGGAGAAACTTATCATTACAGGTTTACAGTTGACCGGCCTGGTACATATTTCTATCATGGACACTATGGTATGCAAAGAGCAGCTGGGTTGGACAAAACGAACCGTTTTCATTACGATGGTGAATTCAACCTTCTTCTTAGTGATTTGTGGCACACAAGCTCACATGAACAAGAAGTTGGTCTCTCTACAAAACCATTAAAATGGATTGGTGAACCTCAGACTCTGCTCATCAATGGAAGAGGACAATTCAATTGTTCCCTTGCATCTAAATTCATCAACACAACCCTACCCCAATGCCATCTTAAAGGTGATGAAGAATGTGCCCCTCAGATTCTTGATGTGGAGCCAAACAAGACCTATAGAATCAGGATTGCCAGCACCACTTCCTTAGCTGCACTCAACTTAGCTATTTCGAATCACAAACTTGTTGTGGTTGAAGTTGATGGAAACTACGTTACACCATTTGCGGTTGATGACATGGACATCTACTCTGGTGAGAGCTACTCAGTGCTCCTTCACACAAACCAAAATCCAAACAAAAATTATTGGCTTTCAATTGGGGTTAGAGGAAGAAAGCCTAATACCCCACAAGGCTTGGCCATTCTAAACTATAAGACCATTTCTGCCTTAATTTTTCCAACTTCTCCACCACCCATCACACCCCTTTGGAATGATTTTGAGCATAGCAAAGCCTTCACCAAAAAAATCATTGCCAAAATGGGAACCCCACAACCTCCGGAGCATTCAGACCGCACACAATACTCCTCCTCAACACCCAAAATCGAGTTGATGGATTATCACATTTTTAACCCTCCTGTGAACCCAAATGCAACAATTGGCAATGGGGTGTACATGTTCAATCTTAATGAAGTCGTTGATGTGATATTGCAAAATGCGAACCAATTAATTGGGAATGGTAGTGAGATTCACCCTTGGCACTTGCATGGACATGACTTTTGGGTTTTGGGGTATGGAGAAGGGAAATTCAAATCGGGTGATGTGAAGAAATTCAATTTCACACAAGCACCCTTAAGGAACACCGCAGTGATATTTCCATATGGTTGGACTGCATTGAGGTTTAAGGCCGATAACCCAGGAGTTTGGGCCTTCCATTGTCACATTGAGCCTCATTTGCACATGGGAATGGGTGTGGTTTTTGCTGAGGGTGTTCACAAAGTTGGAAAAATCCCAAGAGAAGCACTAACTTGTGGTCTTACAGGAAAGAAGCTAATAGAAAACGGACGCTACTAA

>Glyma20g12230.3   sequence type=CDS   gene model=Glyma20g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTGAAAGCTCTTTTTGTTTGGTGCATAATATGGTTGGGTTTGGTAGAATTGTCACTTGGAGGAAGAGTGAGACACTACAAGTTTGATGTGGAGTACATGATCAGAAAGCCAGATTGCTTGGAACACGTTGTGATGGGAATCAACGGCCAGTTTCCCGGCCCAACTATTAGGGCTGAAGTTGGTGACATTCTTGACATTGCTCTCACCAACAAGCTTTTCAGTGAGGGAACTGTTGTTCACTGGCATGGAATCAGACAGGTTGGAACTCCTTGGGCAGATGGAACTGCTTCCATCTCACAGTGTGCTATAAACCCAGGAGAAACTTATCATTACAGGTTTACAGTTGACCGGCCTGGTACATATTTCTATCATGGACACTATGGTATGCAAAGAGCAGCTGGGTTGGACAAAACGAACCGTTTTCATTACGATGGTGAATTCAACCTTCTTCTTAGTGATTTGTGGCACACAAGCTCACATGAACAAGAAGTTGGTCTCTCTACAAAACCATTAAAATGGATTGGTGAACCTCAGACTCTGCTCATCAATGGAAGAGGACAATTCAATTGTTCCCTTGCATCTAAATTCATCAACACAACCCTACCCCAATGCCATCTTAAAGGTGATGAAGAATGTGCCCCTCAGATTCTTGATGTGGAGCCAAACAAGACCTATAGAATCAGGATTGCCAGCACCACTTCCTTAGCTGCACTCAACTTAGCTATTTCGAATCACAAACTTGTTGTGGTTGAAGTTGATGGAAACTACGTTACACCATTTGCGGTTGATGACATGGACATCTACTCTGGTGAGAGCTACTCAGTGCTCCTTCACACAAACCAAAATCCAAACAAAAATTATTGGCTTTCAATTGGGGTTAGAGGAAGAAAGCCTAATACCCCACAAGGCTTGGCCATTCTAAACTATAAGACCATTTCTGCCTTAATTTTTCCAACTTCTCCACCACCCATCACACCCCTTTGGAATGATTTTGAGCATAGCAAAGCCTTCACCAAAAAAATCATTGCCAAAATGGGAACCCCACAACCTCCGGAGCATTCAGACCGCACACAATACTCCTCCTCAACACCCAAAATCGAGTTGATGGGTTTACCAAATGGTCCATTAATAATGTATCCTTAA

Predicted protein sequences of Glyma20g12230

Limit To All Plant Sequences

>Glyma20g12230.2   sequence type=predicted peptide   gene model=Glyma20g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLKALFVWCIIWLGLVELSLGGRVRHYKFDVEYMIRKPDCLEHVVMGINGQFPGPTIRAEVGDILDIALTNKLFSEGTVVHWHGIRQVGTPWADGTASISQCAINPGETYHYRFTVDRPGTYFYHGHYGMQRAAGLDKTNRFHYDGEFNLLLSDLWHTSSHEQEVGLSTKPLKWIGEPQTLLINGRGQFNCSLASKFINTTLPQCHLKGDEECAPQILDVEPNKTYRIRIASTTSLAALNLAISNHKLVVVEVDGNYVTPFAVDDMDIYSGESYSVLLHTNQNPNKNYWLSIGVRGRKPNTPQGLAILNYKTISALIFPTSPPPITPLWNDFEHSKAFTKKIIAKMGTPQPPEHSDRTQYSSSTPKIELMDYHIFNPPVNPNATIGNGVYMFNLNEVVDVILQNANQLIGNGSEIHPWHLHGHDFWVLGYGEGKFKSGDVKKFNFTQAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVVFAEGVHKVGKIPREALTCGLTGKKLIENGRY*

>Glyma20g12230.3   sequence type=predicted peptide   gene model=Glyma20g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLKALFVWCIIWLGLVELSLGGRVRHYKFDVEYMIRKPDCLEHVVMGINGQFPGPTIRAEVGDILDIALTNKLFSEGTVVHWHGIRQVGTPWADGTASISQCAINPGETYHYRFTVDRPGTYFYHGHYGMQRAAGLDKTNRFHYDGEFNLLLSDLWHTSSHEQEVGLSTKPLKWIGEPQTLLINGRGQFNCSLASKFINTTLPQCHLKGDEECAPQILDVEPNKTYRIRIASTTSLAALNLAISNHKLVVVEVDGNYVTPFAVDDMDIYSGESYSVLLHTNQNPNKNYWLSIGVRGRKPNTPQGLAILNYKTISALIFPTSPPPITPLWNDFEHSKAFTKKIIAKMGTPQPPEHSDRTQYSSSTPKIELMGLPNGPLIMYP*

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