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Report for Sequence Feature Glyma20g12220

Feature Type:gene_model
Chromosome:Gm20
Start:17148230
stop:17152571
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g12220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G21105AT Annotation by Michelle Graham. TAIR10: Plant L-ascorbate oxidase | chr5:7172727-7177409 FORWARD LENGTH=588 SoyBaseE_val: 0ISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0046520GO-bp Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0008447GO-mf Annotation by Michelle Graham. GO Molecular Function: L-ascorbate oxidase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF10Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_B9ZZP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ascorbate oxidase n=1 Tax=Pisum sativum RepID=B9ZZP2_PEA SoyBaseE_val: 0ISS
UniRef100_I1NE62UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE62_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g12220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g12220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g051700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g12220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g12220
>Glyma20g12220.1   sequence type=CDS   gene model=Glyma20g12220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTGAAAGCTCTTTTTGTTGGGTGCATAATATGGTTGGGTTTGGTAGAATTGTCAATCGGAGGAATAGTGAGACACTACAAGTTTGATGTGGAGTACATGATCAGAAAACCAGATTGCTTGGAACACGTTCTGATGGGAATCAACGGTCAGTTTCCAGGCCCAACTATTAGGGCTGAAGTTGGTGACATTCTTGACATTGCTCTCACCAACAAGCTTTTCACGGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGGTTGGAACTCCTTGGGCAGATGGAACTGCTTCCATCTCACAGTGTGCTATTAACCCAGGAGAAACTTTTCATTACAAGTTTACAGTTGACAGGCCTGGTACATATTTCTATCATGGACACCATGGTATGCAAAGAGCAGCTGGGTTGTATGGTTCATTGATAGTAGATTTGCCAAAGGGACAAAACGAACCGTTTCATTACGATGGTGAATTCAACCTTCTTTTTAGTGATTTGTGGCACACAAGCTCACATGAACAGGAAGTTGGCCTCTCTACAAAACCACTAAAATGGATTGGTGAACCTCAGACTCTGCTCATCAATGGAAGAGGACAGTTCAATTGTTCCCTTGCTTCTAAATTCATCAACACCACCCTACCCGAGTGCCAATTCAAAGGCGGTGAAGAATGTGCCCCTCAGATTCTTCATGTGGAACCAAACAAGACCTATAGAATCAGGATTGCAAGCACCACATCCTTAGCTGCACTCAACTTAGCCATTTCGAATCACAAACTTGTTGTAGTGGAAGCTGATGGAAACTATGTTACACCATTTGCAGTTGATGACGTGGACATTTACTCTGGCGAGAGTTATTCAGTGCTTCTTCGCACAGACCAAGATCCAAACAAAAATTATTGGCTTTCAATTGGCGTTAGAGGAAGAAAGCCTAGCACCTCACAAGGCCTAACCATTCTAAACTACAAGACAATTTCTGCCTCGATTTTTCCAACTTCTCCACCACCCATCACACCCCTTTGGAATGATTTTGAACATAGCAAAGCATTCACCAAAAAAATCATAGCCAAGATGGGGACCCCACAACCTCCAAAGTTATATGACCGAAGGGTTTTCCTTCTAAACACCCAAAATCGAGTTGATGGGTTCACCAAATGGTCCATTAACAATGTGTCGCTAACATTGCCACCAACCCCTTACTTGGGCTCCATCAAGTTCAAAATAAACAATGCTTTTGACCAAACGCCCCCACCTATGAATTTCCCACAAGATTATGACATCTTTAACCCTCCCGTGAACCCTAATGCAACAATTGGCAATGGGGTGTACATGTTCAACCTTAACGAGGTTGTTGATGTGATATTGCAAAATTCAAACCAATTAAGTGTGAATGGTAGCGAGATTCACCCTTGGCACTTGCACGGACATGACTTTTGGGTTTTGGGATATGGAGAAGGGAAATTCAAATTAGGTGATGAGAAGAAATTCAATTTGACACATGCACCATTGAGGAACACCGCAGTGATATTTCCATATGGTTGGACTGCCTTAAGGTTTAAGGCTGACAACCCAGGAGTTTGGGCCTTCCATTGTCACATTGAGCCTCATTTGCACATGGGAATGGGTGTGATTTTTGCGGAGGGTGTTCACAAAGTTGGGAAAATCCCAAGAGAAGCACTAACTTGTGGACTTACAGGAAAGAAGTTAGTAGAAAATGGACACTACTAA
Predicted protein sequences of Glyma20g12220
>Glyma20g12220.1   sequence type=predicted peptide   gene model=Glyma20g12220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLKALFVGCIIWLGLVELSIGGIVRHYKFDVEYMIRKPDCLEHVLMGINGQFPGPTIRAEVGDILDIALTNKLFTEGTVIHWHGIRQVGTPWADGTASISQCAINPGETFHYKFTVDRPGTYFYHGHHGMQRAAGLYGSLIVDLPKGQNEPFHYDGEFNLLFSDLWHTSSHEQEVGLSTKPLKWIGEPQTLLINGRGQFNCSLASKFINTTLPECQFKGGEECAPQILHVEPNKTYRIRIASTTSLAALNLAISNHKLVVVEADGNYVTPFAVDDVDIYSGESYSVLLRTDQDPNKNYWLSIGVRGRKPSTSQGLTILNYKTISASIFPTSPPPITPLWNDFEHSKAFTKKIIAKMGTPQPPKLYDRRVFLLNTQNRVDGFTKWSINNVSLTLPPTPYLGSIKFKINNAFDQTPPPMNFPQDYDIFNPPVNPNATIGNGVYMFNLNEVVDVILQNSNQLSVNGSEIHPWHLHGHDFWVLGYGEGKFKLGDEKKFNLTHAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEGVHKVGKIPREALTCGLTGKKLVENGHY*






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