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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21105 | AT | Annotation by Michelle Graham. TAIR10: Plant L-ascorbate oxidase | chr5:7172727-7177409 FORWARD LENGTH=588 | SoyBase | E_val: 0 | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0008447 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-ascorbate oxidase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1263 | KOG | Multicopper oxidases | JGI | ISS | |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | ISS | |
| PTHR11709:SF10 | Panther | LACCASE | JGI | ISS | |
| PF00394 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07731 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07732 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_B9ZZP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ascorbate oxidase n=1 Tax=Pisum sativum RepID=B9ZZP2_PEA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NE62 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE62_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g12220 not represented in the dataset |
Glyma20g12220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g051700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g12220.1 sequence type=CDS gene model=Glyma20g12220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTTGAAAGCTCTTTTTGTTGGGTGCATAATATGGTTGGGTTTGGTAGAATTGTCAATCGGAGGAATAGTGAGACACTACAAGTTTGATGTGGAGTACATGATCAGAAAACCAGATTGCTTGGAACACGTTCTGATGGGAATCAACGGTCAGTTTCCAGGCCCAACTATTAGGGCTGAAGTTGGTGACATTCTTGACATTGCTCTCACCAACAAGCTTTTCACGGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGGTTGGAACTCCTTGGGCAGATGGAACTGCTTCCATCTCACAGTGTGCTATTAACCCAGGAGAAACTTTTCATTACAAGTTTACAGTTGACAGGCCTGGTACATATTTCTATCATGGACACCATGGTATGCAAAGAGCAGCTGGGTTGTATGGTTCATTGATAGTAGATTTGCCAAAGGGACAAAACGAACCGTTTCATTACGATGGTGAATTCAACCTTCTTTTTAGTGATTTGTGGCACACAAGCTCACATGAACAGGAAGTTGGCCTCTCTACAAAACCACTAAAATGGATTGGTGAACCTCAGACTCTGCTCATCAATGGAAGAGGACAGTTCAATTGTTCCCTTGCTTCTAAATTCATCAACACCACCCTACCCGAGTGCCAATTCAAAGGCGGTGAAGAATGTGCCCCTCAGATTCTTCATGTGGAACCAAACAAGACCTATAGAATCAGGATTGCAAGCACCACATCCTTAGCTGCACTCAACTTAGCCATTTCGAATCACAAACTTGTTGTAGTGGAAGCTGATGGAAACTATGTTACACCATTTGCAGTTGATGACGTGGACATTTACTCTGGCGAGAGTTATTCAGTGCTTCTTCGCACAGACCAAGATCCAAACAAAAATTATTGGCTTTCAATTGGCGTTAGAGGAAGAAAGCCTAGCACCTCACAAGGCCTAACCATTCTAAACTACAAGACAATTTCTGCCTCGATTTTTCCAACTTCTCCACCACCCATCACACCCCTTTGGAATGATTTTGAACATAGCAAAGCATTCACCAAAAAAATCATAGCCAAGATGGGGACCCCACAACCTCCAAAGTTATATGACCGAAGGGTTTTCCTTCTAAACACCCAAAATCGAGTTGATGGGTTCACCAAATGGTCCATTAACAATGTGTCGCTAACATTGCCACCAACCCCTTACTTGGGCTCCATCAAGTTCAAAATAAACAATGCTTTTGACCAAACGCCCCCACCTATGAATTTCCCACAAGATTATGACATCTTTAACCCTCCCGTGAACCCTAATGCAACAATTGGCAATGGGGTGTACATGTTCAACCTTAACGAGGTTGTTGATGTGATATTGCAAAATTCAAACCAATTAAGTGTGAATGGTAGCGAGATTCACCCTTGGCACTTGCACGGACATGACTTTTGGGTTTTGGGATATGGAGAAGGGAAATTCAAATTAGGTGATGAGAAGAAATTCAATTTGACACATGCACCATTGAGGAACACCGCAGTGATATTTCCATATGGTTGGACTGCCTTAAGGTTTAAGGCTGACAACCCAGGAGTTTGGGCCTTCCATTGTCACATTGAGCCTCATTTGCACATGGGAATGGGTGTGATTTTTGCGGAGGGTGTTCACAAAGTTGGGAAAATCCCAAGAGAAGCACTAACTTGTGGACTTACAGGAAAGAAGTTAGTAGAAAATGGACACTACTAA
>Glyma20g12220.1 sequence type=predicted peptide gene model=Glyma20g12220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLKALFVGCIIWLGLVELSIGGIVRHYKFDVEYMIRKPDCLEHVLMGINGQFPGPTIRAEVGDILDIALTNKLFTEGTVIHWHGIRQVGTPWADGTASISQCAINPGETFHYKFTVDRPGTYFYHGHHGMQRAAGLYGSLIVDLPKGQNEPFHYDGEFNLLFSDLWHTSSHEQEVGLSTKPLKWIGEPQTLLINGRGQFNCSLASKFINTTLPECQFKGGEECAPQILHVEPNKTYRIRIASTTSLAALNLAISNHKLVVVEADGNYVTPFAVDDVDIYSGESYSVLLRTDQDPNKNYWLSIGVRGRKPSTSQGLTILNYKTISASIFPTSPPPITPLWNDFEHSKAFTKKIIAKMGTPQPPKLYDRRVFLLNTQNRVDGFTKWSINNVSLTLPPTPYLGSIKFKINNAFDQTPPPMNFPQDYDIFNPPVNPNATIGNGVYMFNLNEVVDVILQNSNQLSVNGSEIHPWHLHGHDFWVLGYGEGKFKLGDEKKFNLTHAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEGVHKVGKIPREALTCGLTGKKLVENGHY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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