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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma20g12110

Feature Type:gene_model
Chromosome:Gm20
Start:17020894
stop:17024223
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28070AT Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730 SoyBaseE_val: 0ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI ISS
PTHR19241:SF20Panther ABC TRANSPORTER JGI ISS
PF00005PFAM ABC transporter JGI ISS
UniRef100_G8A154UniRef Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family n=1 Tax=Medicago truncatula RepID=G8A154_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NE57UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE57_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g12110 not represented in the dataset

Glyma20g12110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g052300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g12110.2   sequence type=CDS   gene model=Glyma20g12110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAATACAGTCTCAGTCAGATCATTATAGATCTTCATCATTGTCGGCAAGCAGCCCAGCAAGTAGGGTGCCATCAAGTAACTTTTTCTATCTGCGTAAGCCTGGTTCACTCATGCAGCCAATTTCTTTTGAGGATTCACCTGAGTGGGATGATACTGATATTGATGTTAGAGTTGAGGAAGGAGGTGACTCTATCAATGTTGCATCAACGCTGGCTTCTCCTTCTCTTTCAAAGCTCAACAGCAGGTCCCTGCAGTCCCCATACCTACCGGAGGGTGCTGTTATTCCACGGAAAATTGCTGGGGCTTCTGTAGCCTGGAAAGATTTGACCGTTACAATAAAGGGGAAAAGGAAGTACTCTGATAAGGTTATTAAGAGTTCAACTGGTTATGCGTTACCTGGTACCGTGACCGTGATTATGGGGCCTGCTAAATCAGAGAAATCTACCTTATTACAAGCCATTGCAGGAAGATTGCATCCTTCTACCAGGATGTATGGTGAAGTTTTTGTAAATGGAGCAAAATCACAAATGCCCTATGGGTCATATGTTTATGTGGAGAGAGAAACCACTTTGATTGGATCCCTCACTGTGCGGGAGTTTCTGTATTATTCAGCTCTGCTTCAGCTTCCTGGTTTCTTTTGTCAGAAAAAGAGTGTGGTAGAGGATGCTATACATGCAATGTCTTTAGGTGATCATGCAAATAAACTTATAGGTGGACATTGTTATATGAAAGGACTTCCTAGTGGGGAGAGAAGGCTTGTTAGCATTGCCAGGGAGCTTGTGATGAGACCACGTATTTTATTTATTGATGAACCTCTTTATCATTTGAACAGTGTCTCAGCACTTTTAATGATGGTTACATTGAAGAGACTTGCAAGCACTGGTTACACTCTCATATTGACCATCTATCAGAGCAGCACAGAAGTCTTTGGCCTTTTTTACCACATATGTCTACTTTCAAATGGAAACACCCTCTTCTTTGGAGAAACATTAGCTTGCTTGCAGATTGTCTTGAACTTCCTGTTTTTGCTAACCTTCTCTGATATCCTTCTGATCACTTTCTACTTTCTACGTGCAATTAATACAGATTTTGACAGGATTATTGCAATGTGTAAAAACTGGCAGGATGACAATGGAGATTTTTCTTCAGTGAACATGGACACTGCTGTTGCTATACGCACGCTTGAAGCAACTTATAAGTCATCAGCAGATGCAGCTGCTGTTGAAACTATGATTCTGAAACTTGCTGAGAAGGTAAAGCTAGCAAATAGCAATGCTAATTGGATAGCAGTTTTGATATGGAGATCTTTATTAGTTGTGTCAAGGGAATGGAAATATTGTTGGCTGCATCTTATTCTTTATATGCTTCTCACGCTGTGTATTGGAACTGTATTTTCTGGTCTGGGGCATTCTCTGTCTTCTGTTGTGACAAGAGTTGCAGCAATTTTTGTATTTGCATCATTCTCTTCCCTTCTAAGCATTGCCAGGGTGCCTGCACTTAAGAAAGAAATCAAGTTTGTTCATTTGGCAAGTATTTTTATATGGTTGAGCCATGATCTCCTGAATGCGGTCCTCAATTACAACAGTAGGAGTAGTAGTTGA

>Glyma20g12110.2   sequence type=predicted peptide   gene model=Glyma20g12110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEIQSQSDHYRSSSLSASSPASRVPSSNFFYLRKPGSLMQPISFEDSPEWDDTDIDVRVEEGGDSINVASTLASPSLSKLNSRSLQSPYLPEGAVIPRKIAGASVAWKDLTVTIKGKRKYSDKVIKSSTGYALPGTVTVIMGPAKSEKSTLLQAIAGRLHPSTRMYGEVFVNGAKSQMPYGSYVYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLNSVSALLMMVTLKRLASTGYTLILTIYQSSTEVFGLFYHICLLSNGNTLFFGETLACLQIVLNFLFLLTFSDILLITFYFLRAINTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLAEKVKLANSNANWIAVLIWRSLLVVSREWKYCWLHLILYMLLTLCIGTVFSGLGHSLSSVVTRVAAIFVFASFSSLLSIARVPALKKEIKFVHLASIFIWLSHDLLNAVLNYNSRSSS*







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