SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63610 | AT | Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase E;1 | chr5:25463645-25465057 REVERSE LENGTH=470 | SoyBase | E_val: 3.00E-146 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0659 | KOG | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 | JGI | ISS | |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | ISS | |
| PTHR24056:SF83 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_B9RYP0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cdk8, putative n=1 Tax=Ricinus communis RepID=B9RYP0_RICCO | SoyBase | E_val: 7.00E-148 | ISS |
| UniRef100_I1NE52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NE52_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g11980 not represented in the dataset |
Glyma20g11980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g11980.1 sequence type=CDS gene model=Glyma20g11980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACAATCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCATCTTGCTCACCTGAACCAAATCCCCGCTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGACGACGACGTCTCCCCCACCCCCATCTGCAAAATCATGTTGCTGAGGGAGATTACGCACGAGAACCTTGTCAAGCTCGTCAATGTACACATCAACCACGTCGACATGTCTCTGTACCTTGCCTTCGATTATGCCAAGCACGATCTCTATTTCGGTATATCCTTCCATCGAGAAGCATTTTTCCTTTTTAAAATTATTAGGCATCATAGGGACAAACTAAACCATTCCATTAATCAGTACATTGTTAAGTCTTTGCTTTGGCAGTTGCTCAATGGACTAAACTATCCGCACAGTAATTGGATGATACATCAAGATTTGAAGCCATCAAATATATTGGTTATGAGTGAAGGAGAGGAGCATGGAGTTGTTAAGATGGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTTTGAAGCCGTTATGTGACAATGGGGTTGTTGTAACCATTTGGTATCATGCACCTGAGTTGCTTCTTGGACCAAAACATTATACCAGTGTTGTTGATATGTGGATTGTGGGATGCATTTTTGCTAAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGTACTTGATCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGTAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAACCTTGCATATGACCTCTTGTCAAAGATGCTT
>Glyma20g11980.1 sequence type=predicted peptide gene model=Glyma20g11980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high YNLRKNRRRHLRPHLAHLNQIPAGTPSKSIAIKKFKQSKDDDDVSPTPICKIMLLREITHENLVKLVNVHINHVDMSLYLAFDYAKHDLYFGISFHREAFFLFKIIRHHRDKLNHSINQYIVKSLLWQLLNGLNYPHSNWMIHQDLKPSNILVMSEGEEHGVVKMADFGLARIYQAPLKPLCDNGVVVTIWYHAPELLLGPKHYTSVVDMWIVGCIFAKLLTLKPLFQGAVLDQLDKIFKVLGHPTLEKWPSLVSLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKNLAYDLLSKML
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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