SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60470 | AT | Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF247) | chr3:22344813-22346884 FORWARD LENGTH=540 | SoyBase | E_val: 6.00E-67 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PF03140 | PFAM | Plant protein of unknown function | JGI | ISS | |
| UniRef100_UPI000233DC5E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC5E related cluster n=1 Tax=unknown RepID=UPI000233DC5E | SoyBase | E_val: 0 | ISS |
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Glyma20g11740 not represented in the dataset |
Glyma20g11740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g053400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g11740.2 sequence type=transcript gene model=Glyma20g11740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACGTACATATAGATAGTTGACTTGAATGCTATATATTATTAATCCTAGCTTCAAAACACATTGAACAGAAGTATTTACCAGATTAAGCACCAAAGATATTAGAGAAGTTCGTCACAGATCGATGGTGAAGGCCGTGAAGCTGAGTATGTTGTTTATGATATTGTATGCACACTGGTGTCCTCTACGACTCTTACTATAAACCTTCGAGATTCAGTGAAACAAGGATATTGGTGATGAAGGAAATGGAGTTACAAGAGAATGGTTCAATTGAAAGAGAAAATAAAAATAAAGATTTGATAATTCAAATGGAAGACATGTTAGAAAGTGTGGAGCTTCCCTTAGTGTCACGTTGTTGTATCTACAAAGTACCTCAGAAAATTCGCAAGGTGAATGAAGCAGCTTATACTCCTACCATTGTTTCCATTGGCCCATTTCACTATGGAGACAAGAGATTGCAATCAATGGAAGAGCTCAAATTGAGATACCTCAAGAGTTTTCTTGAAAGGACTCAAAAGGGGTTAGGAGATTGCATAGAATACATTAAAGAGTCTGAAGAAGTTATTAGAAGTTGTTATTCAGAGACCATTGAACAAAGCAGTGATGATTTAGTGAGGACTGTTTTGACAGATGCTTGCTTCATAATTGAGTATTTTCTAAGATCTCTAGAGTGGACACAAGAAGATCCTTTATTATCCAAACCATGGTTGAGATGTGATGTGAAGCTTGATCTGATATTACTTGAAAATCAGCTTCCATGGTTTGTTCTTGAAGAGATATTCAACCTGACAGAACCTAGTTGCTTCAATGGTGAGGTTTCCTCATTTTTTGTTGTTGCTTTTCACTATTTTAAGGTCCATTTCCTTCAAAGCATATTGCCTGGAGTAGATATTAGCAAGTTCACCATCGATCATTTCCATATGCACTACCAACAATATATAATGAAGCCTGATCATATTGACATGCAATTGCATAACCTCACTGATTTGCTTCGGGTCTTTTACTTACCTCCTGATGGGATGCCAAGAAGAGAAAAAGAAACAGTGAAGCATCTCTATAGTGCAAGCCAGCTAGTGGAGGCAGGTGTGAAGCTCCATGTTGGTAAAAACAAAAGTGCACTAGAGTTACAATTTGAAAAAGGTGTGTTGACAATACCAAGATTTGAAGTTTGTCATTGGACTGAGATTCTTATTAGAAATGTGGTTGCAATTGAGCAGTGTCATTATCCATTTCAAACCTACATTACTGATTACATATTCGTCTTCGATTTCCTTATTGACACTAGCCAGGATGTTGATACACTTGTTGACAAGGGAATCATGATTAACACATTGGGAGATAGCAGTGCAGTTGCAAATATGGTTAACAATCTGTGCCTAAATGTTGTTCAGGAAAATATTAATATTAATGGTGGTTATATTTATCTCTGCAGAAAACTGAATTGCTTTTATGAGGATCCTTCCCACAAATACAAGGCAATCTTCATGCATGACTACTTCAGCACTCCTTGGAAAATAACATCTTTCATTGCTGCAATTGTGCTGCTTTTTCTTACTCTAATTCAAGCCACATGTTCTGTTATCTCTTTATTTTACCAAAAATAAAGAGATTTTGGGCTTAACTAGTGTACTTTCCACTCTTTTTTTTTTTAATTGTCATACTCTCTATTCTTAAATGTCATTATATATTGTTAAGTTTGCTTTCAAAGGAGTTATAAGTTTGGTTTGATGATTAAAG
>Glyma20g11740.1 sequence type=CDS gene model=Glyma20g11740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAAATGGAGTTACAAGAGAATGGTTCAATTGAAAGAGAAAATAAAAATAAAGATTTGATAATTCAAATGGAAGACATGTTAGAAAGTGTGGAGCTTCCCTTAGTGTCACGTTGTTGTATCTACAAAGTACCTCAGAAAATTCGCAAGGTGAATGAAGCAGCTTATACTCCTACCATTGTTTCCATTGGCCCATTTCACTATGGAGACAAGAGATTGCAATCAATGGAAGAGCTCAAATTGAGATACCTCAAGAGTTTTCTTGAAAGGACTCAAAAGGGGTTAGGAGATTGCATAGAATACATTAAAGAGTCTGAAGAAGTTATTAGAAGTTGTTATTCAGAGACCATTGAACAAAGCAGTGATGATTTAGTGAGGACTGTTTTGACAGATGCTTGCTTCATAATTGAGTATTTTCTAAGATCTCTAGAGTGGACACAAGAAGATCCTTTATTATCCAAACCATGGTTGAGATGTGATGTGAAGCTTGATCTGATATTACTTGAAAATCAGCTTCCATGGTTTGTTCTTGAAGAGATATTCAACCTGACAGAACCTAGTTGCTTCAATGGTGAGGTTTCCTCATTTTTTGTTGTTGCTTTTCACTATTTTAAGGTCCATTTCCTTCAAAGCATATTGCCTGGAGTAGATATTAGCAAGTTCACCATCGATCATTTCCATATGCACTACCAACAATATATAATGAAGCCTGATCATATTGACATGCAATTGCATAACCTCACTGATTTGCTTCGGGTCTTTTACTTACCTCCTGATGGGATGCCAAGAAGAGAAAAAGAAACAGTGAAGCATCTCTATAGTGCAAGCCAGCTAGTGGAGGCAGGTGTGAAGCTCCATGTTGGTAAAAACAAAAGTGCACTAGAGTTACAATTTGAAAAAGGTGTGTTGACAATACCAAGATTTGAAGTTTGTCATTGGACTGAGATTCTTATTAGAAATGTGGTTGCAATTGAGCAGTGTCATTATCCATTTCAAACCTACATTACTGATTACATATTCGTCTTCGATTTCCTTATTGACACTAGCCAGGATGTTGATACACTTGTTGACAAGGGAATCATGATTAACACATTGGGAGATAGCAGTGCAGTTGCAAATATGGTTAACAATCTGTGCCTAAATGTTGTTCAGGAAAATATTAATATTAATGGTGGTTATATTTATCTCTGCAGAAAACTGAATTGCTTTTATGAGGATCCTTCCCACAAATACAAGGCAATCTTCATGCATGACTACTTCAGCACTCCTTGGAAAATAACATCTTTCATTGCTGCAATTGTGCTGCTTTTTCTTACTCTAATTCAAGCCACATGTTCTGTTATCTCTTTATTTTACCAAAAATAA >Glyma20g11740.2 sequence type=CDS gene model=Glyma20g11740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACACTGGTGTCCTCTACGACTCTTACTATAAACCTTCGAGATTCAGTGAAACAAGGATATTGGTGATGAAGGAAATGGAGTTACAAGAGAATGGTTCAATTGAAAGAGAAAATAAAAATAAAGATTTGATAATTCAAATGGAAGACATGTTAGAAAGTGTGGAGCTTCCCTTAGTGTCACGTTGTTGTATCTACAAAGTACCTCAGAAAATTCGCAAGGTGAATGAAGCAGCTTATACTCCTACCATTGTTTCCATTGGCCCATTTCACTATGGAGACAAGAGATTGCAATCAATGGAAGAGCTCAAATTGAGATACCTCAAGAGTTTTCTTGAAAGGACTCAAAAGGGGTTAGGAGATTGCATAGAATACATTAAAGAGTCTGAAGAAGTTATTAGAAGTTGTTATTCAGAGACCATTGAACAAAGCAGTGATGATTTAGTGAGGACTGTTTTGACAGATGCTTGCTTCATAATTGAGTATTTTCTAAGATCTCTAGAGTGGACACAAGAAGATCCTTTATTATCCAAACCATGGTTGAGATGTGATGTGAAGCTTGATCTGATATTACTTGAAAATCAGCTTCCATGGTTTGTTCTTGAAGAGATATTCAACCTGACAGAACCTAGTTGCTTCAATGGTGAGGTTTCCTCATTTTTTGTTGTTGCTTTTCACTATTTTAAGGTCCATTTCCTTCAAAGCATATTGCCTGGAGTAGATATTAGCAAGTTCACCATCGATCATTTCCATATGCACTACCAACAATATATAATGAAGCCTGATCATATTGACATGCAATTGCATAACCTCACTGATTTGCTTCGGGTCTTTTACTTACCTCCTGATGGGATGCCAAGAAGAGAAAAAGAAACAGTGAAGCATCTCTATAGTGCAAGCCAGCTAGTGGAGGCAGGTGTGAAGCTCCATGTTGGTAAAAACAAAAGTGCACTAGAGTTACAATTTGAAAAAGGTGTGTTGACAATACCAAGATTTGAAGTTTGTCATTGGACTGAGATTCTTATTAGAAATGTGGTTGCAATTGAGCAGTGTCATTATCCATTTCAAACCTACATTACTGATTACATATTCGTCTTCGATTTCCTTATTGACACTAGCCAGGATGTTGATACACTTGTTGACAAGGGAATCATGATTAACACATTGGGAGATAGCAGTGCAGTTGCAAATATGGTTAACAATCTGTGCCTAAATGTTGTTCAGGAAAATATTAATATTAATGGTGGTTATATTTATCTCTGCAGAAAACTGAATTGCTTTTATGAGGATCCTTCCCACAAATACAAGGCAATCTTCATGCATGACTACTTCAGCACTCCTTGGAAAATAACATCTTTCATTGCTGCAATTGTGCTGCTTTTTCTTACTCTAATTCAAGCCACATGTTCTGTTATCTCTTTATTTTACCAAAAATAA
>Glyma20g11740.1 sequence type=predicted peptide gene model=Glyma20g11740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEMELQENGSIERENKNKDLIIQMEDMLESVELPLVSRCCIYKVPQKIRKVNEAAYTPTIVSIGPFHYGDKRLQSMEELKLRYLKSFLERTQKGLGDCIEYIKESEEVIRSCYSETIEQSSDDLVRTVLTDACFIIEYFLRSLEWTQEDPLLSKPWLRCDVKLDLILLENQLPWFVLEEIFNLTEPSCFNGEVSSFFVVAFHYFKVHFLQSILPGVDISKFTIDHFHMHYQQYIMKPDHIDMQLHNLTDLLRVFYLPPDGMPRREKETVKHLYSASQLVEAGVKLHVGKNKSALELQFEKGVLTIPRFEVCHWTEILIRNVVAIEQCHYPFQTYITDYIFVFDFLIDTSQDVDTLVDKGIMINTLGDSSAVANMVNNLCLNVVQENININGGYIYLCRKLNCFYEDPSHKYKAIFMHDYFSTPWKITSFIAAIVLLFLTLIQATCSVISLFYQK* >Glyma20g11740.2 sequence type=predicted peptide gene model=Glyma20g11740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHTGVLYDSYYKPSRFSETRILVMKEMELQENGSIERENKNKDLIIQMEDMLESVELPLVSRCCIYKVPQKIRKVNEAAYTPTIVSIGPFHYGDKRLQSMEELKLRYLKSFLERTQKGLGDCIEYIKESEEVIRSCYSETIEQSSDDLVRTVLTDACFIIEYFLRSLEWTQEDPLLSKPWLRCDVKLDLILLENQLPWFVLEEIFNLTEPSCFNGEVSSFFVVAFHYFKVHFLQSILPGVDISKFTIDHFHMHYQQYIMKPDHIDMQLHNLTDLLRVFYLPPDGMPRREKETVKHLYSASQLVEAGVKLHVGKNKSALELQFEKGVLTIPRFEVCHWTEILIRNVVAIEQCHYPFQTYITDYIFVFDFLIDTSQDVDTLVDKGIMINTLGDSSAVANMVNNLCLNVVQENININGGYIYLCRKLNCFYEDPSHKYKAIFMHDYFSTPWKITSFIAAIVLLFLTLIQATCSVISLFYQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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