SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G05642 | AT | Annotation by Michelle Graham. TAIR10: Nucleic acid-binding, OB-fold-like protein | chr2:2098253-2100867 REVERSE LENGTH=532 | SoyBase | E_val: 1.00E-15 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0851 | KOG | Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins | JGI | ISS | |
| PF02721 | PFAM | Domain of unknown function DUF223 | JGI | ISS | |
| PF08646 | PFAM | Replication factor-A C terminal domain | JGI | ISS | |
| UniRef100_G7JLV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Replication factor-a protein 1 (Rpa1) family protein n=1 Tax=Medicago truncatula RepID=G7JLV9_MEDTR | SoyBase | E_val: 1.00E-63 | ISS |
| UniRef100_UPI000233957A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233957A related cluster n=1 Tax=unknown RepID=UPI000233957A | SoyBase | E_val: 4.00E-126 | ISS |
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Glyma20g11656 not represented in the dataset |
Glyma20g11656 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g053800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g11656.1 sequence type=CDS gene model=Glyma20g11656 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGTGTTGCTGATAAAATTAAGTTGATAGATGGATCAAGGGAAGCTTTTAAGCTTTCTGTAAGGATCACTGATCTTTGGTTCATTAGGATTCCCGAAAAGTCTGAACAAGTCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAACAGGATCAGTTGAAGTCTCGCAAGGCTAATTTGAAAGAAAATTTAACTTATGTGATGCATAATTTTAAAGTTATGAAGAATGATGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATGTTTTACTGGAGTTACTGTTGTTAGGCAATCTGATATGGAACACTTACTTTTTAGGAAATTCAGATTTGTTGATTTTTCCAGTGTCATTGCTGGTCATTTTCAAATTGGACTCTTGGTGCTATCCTGCACACTCTGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGACATTGAAGATGAAAGACTGGTCGTTATTCTTTTGACATATGCCAGGATTAAGGAAGCACAGGGATCATATCTGCTGTCGGTCAGTAATTCTTTCAAGGCGTTTAAACTCATGATCAACAACCTTGTGTTGGAAATTCAAGAATTTAGAGAGAGATCAGTTTTGACGCCTATTGGACAAGGGAGTTCACAGGTTTCAAGGTCATCTCAATTATCATCAAAAGATGTGTTTCTGTCAAAGGCTGAAGAGAAAAATATCTCTCAGATTAATGCCACTTCCGAGGAAATTGTTTGTGTTAGTGTCGCCAAGATTACAACAATGGTGATGGACAACTATTCATGGTGCTATCTGGCTTGCGGTCAATGTTATAAAAAAGCTGACATAGAAACTGTGTCGTTCACATGTCCGTGTGGCAAAGACAACGATCAACCTTTACTAAGGTATAGAGTTGAAGTGATGGTTAATCACCAGGGTGAACAGACCAAATTTTTTATCTGGGACCGTGAATGTGCACAGTTAATTGGTCAATCAACGGATGAAGTCAATAGACTCAAAATAGAAGATGGCGATGTTGATTTAAATGCCTCTCCTCAAGCACTTGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTTTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATGTTGTGCTGGATATGATTCCCGATAGTGAGGTTGTGTTTTGTCAAATAATTTCAAAAGATAAAAATACAGCAAGTTCAAAATTCAGCTTATGTTGTGGAGATGACAAAGTTGAACTTCCATTATTATAA
>Glyma20g11656.1 sequence type=predicted peptide gene model=Glyma20g11656 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACVADKIKLIDGSREAFKLSVRITDLWFIRIPEKSEQVEMVVVDSDGDEIHVVCKQDQLKSRKANLKENLTYVMHNFKVMKNDGKFRVCDHEYKLCFTGVTVVRQSDMEHLLFRKFRFVDFSSVIAGHFQIGLLVLSCTLWENYCLQFLSYLNDIEDERLVVILLTYARIKEAQGSYLLSVSNSFKAFKLMINNLVLEIQEFRERSVLTPIGQGSSQVSRSSQLSSKDVFLSKAEEKNISQINATSEEIVCVSVAKITTMVMDNYSWCYLACGQCYKKADIETVSFTCPCGKDNDQPLLRYRVEVMVNHQGEQTKFFIWDRECAQLIGQSTDEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNFVVLKYSDESDLINVVLDMIPDSEVVFCQIISKDKNTASSKFSLCCGDDKVELPLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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