Glyma20g11067 - SoyBase

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Report for Sequence Feature Glyma20g11067

Feature Type:	gene_model
Chromosome:	Gm20
Start:	15607686
stop:	15608672
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g11067

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26940	AT	Annotation by Michelle Graham. TAIR10: C2H2-type zinc finger family protein \| chr2:11496518-11497378 REVERSE LENGTH=286	SoyBase	E_val: 1.00E-15	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR26374	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26374:SF459	Panther		JGI		ISS
UniRef100_G7IUR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tapetum-specific zinc finger protein n=1 Tax=Medicago truncatula RepID=G7IUR9_MEDTR	SoyBase	E_val: 6.00E-32	ISS
UniRef100_I1LWB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB7_SOYBN	SoyBase	E_val: 2.00E-88	ISS

Expression Patterns of Glyma20g11067

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g11067 not represented in the dataset	Glyma20g11067 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g11067

Paralog	Evidence	Comments
Glyma13g04041	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g11067 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma20g11067

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g11067

Limit To All Plant Sequences

>Glyma20g11067.1   sequence type=CDS   gene model=Glyma20g11067   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAAAAGATAAGCATGCGGTTTCAGATCATCATGGGTGGGTTAAATCTTGCAAGAAAGAGAAGATGAAGCAGCAACGATCGCTTCTTCTGGGTTCTTGCCAAGCTGAGTTAGAATCACCATCTGCAGCGAAAAGCCCTTCACGAACGGTACGTGAGTGCAATATTTGCGGCAAGGTTTTCAGCAGCGGTAAGGCTTTGGGGGGTCACAGAAGATCGCACTTTCAGAAGCACCAGAAGAAGGTAAAAGTCCGTTTCACTAATCACTCATCAAAAGAAGCTGGTGATACCAGCAACAATATTAATAGGGCTAGCAATTGTGATTATGATGCTGATGATGACGGAAAACGCGTTTGTTGCATTTGCAAGAAGGAATTCCCCACAAAGAATGCTTTGTTTGGTCACATGCGATCTCACCCTGAGAGGTCATGGAGGGGTGTGTCTCCTCCCACTCATTTTCCCAATAAGAACTCTTCGTCTTCTTCTTCTCTCTCTTCTTCTTTCTCTTTTTCTTCCCATAATTCTGATTCTATGGAGAAAAACATGGAAGGGGATCGTGATGATTATGATGAATGTGTTGGTGTTGGAGCTGTTTGTGATGGTGGGGGTAATAGGGCTATTGATCTTTCAACTGTTACTTGCCCCAGTTGGCTTAAGACTGATGTGAGAGGAAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTTGCTTACTTAAGTATGAAGTGCGGCCGAAGAGTGCTCCACCTCTAA

Predicted protein sequences of Glyma20g11067

Limit To All Plant Sequences

>Glyma20g11067.1   sequence type=predicted peptide   gene model=Glyma20g11067   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQKDKHAVSDHHGWVKSCKKEKMKQQRSLLLGSCQAELESPSAAKSPSRTVRECNICGKVFSSGKALGGHRRSHFQKHQKKVKVRFTNHSSKEAGDTSNNINRASNCDYDADDDGKRVCCICKKEFPTKNALFGHMRSHPERSWRGVSPPTHFPNKNSSSSSSLSSSFSFSSHNSDSMEKNMEGDRDDYDECVGVGAVCDGGGNRAIDLSTVTCPSWLKTDVRGRKCIGAYEAAETLAYLSMKCGRRVLHL*

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