Glyma20g11040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g11040

Feature Type:	gene_model
Chromosome:	Gm20
Start:	15555630
stop:	15561246
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g11040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06100	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 33 \| chr5:1838555-1840386 FORWARD LENGTH=520	SoyBase	E_val: 1.00E-84	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009789	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045926	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of growth	SoyBase	N/A	ISS
GO:0048235	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PTHR10641:SF30	Panther	MYB-RELATED TRANSCRIPTION FACTOR	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_E5RT67	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor (Fragment) n=1 Tax=Lupinus albus RepID=E5RT67_LUPAL	SoyBase	E_val: 3.00E-143	ISS
UniRef100_UPI000233DC0E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DC0E related cluster n=1 Tax=unknown RepID=UPI000233DC0E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g11040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g11040

Paralog	Evidence	Comments
Glyma13g04031	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g11040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g047600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g11040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g11040

Limit To All Plant Sequences

>Glyma20g11040.3   sequence type=transcript   gene model=Glyma20g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCAAATAAGCTCAATGTACTGATCAAACTCTTTTCTCTCTCTTCAAACTCAATCTTTTCTTTCCTCTTCATGTGGATCTGTACTTGGTTCTTTTCCTTCCATTTTTTATTAATCAAAATACTTTCAATTTCAATTTCATGTCATTTCTGAAACCTCTTTCTGGGTTTTTCTTCTCTTCTCCTGTTTTTTCTCTTCTGAGTTGGCAATTTTCGTTTTGAGATTCCTGGTTGTGGATTGTTTCTCAGAAATGTGTAAAGTTTTCTTCTTTGTAGCTGTGTTCAGTGTTGAATTTAAGAATGTGATTCCGTGTCAGGGGCAGCTGTGATGTGATTCCAGATCCTCTTGTTGCTTTCTCAGAAGTGATTCATGGTTTTTTTCTGCTTGTATCGATCTATTAATTCATCAAAAAACCAAAAAGGGTCCTACCTGTATCCCATTTCCATTGGTGTTCTTTACCACAATTTCTTAATTTCAAAGATCAGTTCATGGATGCTGGCTTACCATAGATACTGGGGTTCGTTTTACTTGGAAATCTCTTTGTTCAGGCATATTGACAGCTATGAGTAGTGTGACTAGTGGGGGTGATAATCGAAAAATATCCAAAGGTCGTCGGTCATCATCATTAGAGGAAGAAGCTGGAGTTGGAGGTAACATAAGAGGAGAAAGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGCCAAAAAACACGGACAAGGCAATTGGAATGCAGTACATAAATATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTGAATTTACTGCAGAAGAAGAGAATCGAATCCTTGAACTACATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGGTTTGTAGAATTGTAACTTCTTTTAATGTTTTGCCATTGTATATTATGCTAATGCTTTTAGCTAAGTTATTCAATAAGCTTATCCACATAGTCACTTGTCTTATATCTTTGGTTGATGACATGGAGAGCACTCACACACTAAAGATGAATTTCTGGCATGGACAATGCTATATTAATAGAATATAATAGTATTTTTGTCTGTAAACATATCTATAAATACGGAAGGCTCATGACACATGGCAGTTATACACTATTCTCTGGATCTTGGATGTGTTTGGTATAGGTCTTTTAGAATCACGGAGTCAGAGAGAAAATTAAAGAACTGAAAGTTTGTATTATTGCTATCATGATTCCTGATTCATGCTTGGTGTTCCCTCCCTGGATATATTCAGATTTGGATACTGTGATTCAAACCCCTGTGGTTGAGACATGTAAGCTTTATTGCTATTCATCATTCATGCATGATGCCCCCTCCCTGCATAAATTTTGATTCATTCTTCTTCATGCTTGCAAATCTATAGTTTGCCTCTTGTACAATGAAATTTTCTTTTGGTGATTTTGATCCACTTGGATTATATAAGCTTTGTGAATTTGTTGTGGTTATATCATTGCAATTTAGTAACATTTCACAACTTTTGGCATTATTTAGCTGTAATATTTAAAATTTATGGTTTTGTGTGATGTGATTTGAATGGATAATTATTAGTAGTGCTACATATCTCCACTTTTTTATTCATTGTCTCAGATGGAGCCTTGTTTTCTGATTTTTTTTTTTATCAAGAGCTTATAAGGTTATATGAATATTCTGTTGATTATATTACTGTAATGATTAATAGGTTATCTGATAGTAAAACTAGCTAGGTCATTCTTGGATTGGGTTGAAGAGCCATTTTAGTTGCCTGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATTGCAATCAAGAAAGTCAAAATATTAGCATCCTGTCAAATGAAGCCTCCCAGCATGGTGATCTGTCACAAACAGACTTTGATATACCAGACGTGGAATTCAAAATTTTCAAATTTCGTCATGGTCTATCACATGGACAGTCAATATTTGATATGCCTGAAAGTAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTATAACTTGTTCCCAACTATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATATGATAGTTTTGAAAGTTGTACAATTAATGCTGCCCCACTATTTGATCAGTATGACAATTATACTTCTGAAAAAATTTCTGACCATCCTAGGTTGTCTCTTCCACGTGATCCCGTTCTTAACACCAATGATCAGTTTAATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATGTTTAGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACGTCCCCGCTTCCTTCACTCGAGTCTGTTGATACATTGATTCAGTCTCCTGTTGTTGAGCCTATTCTATTAGATCCCATTTCTCCGCAGAGCAGTGGTTTGCTGGAAGCGATAGTCCACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTACAAGAAACAATTGGTACAACCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATTCCTTTCAGACAAAATGGTATGAACTAGGGGAGCCAAATTCCCCCTTTGGTCAATCTGCTGCTTCAGTTCTAATTGAGTATACTCCTGTAAGCATGTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCACCCAATTTCCAGACAGTTCCAGGAAGAAAAAAAATATATTGAAACAGATGGATTATACACAGCCAGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACCGAGTATGGAAGTGATCAATCTGTTCTGCAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGCGCTAGCCATAGCAAGTAGGTGGGTATAGATGCATTGTTTTGGCATTAGTGTATTGCCTGTTCATGACATAACTTCATTTTATTTTTTGTCAACTTTCTTAACACTATTTGGTTCTTTGTTTTTTTTTCTTTCTCAGTCATCTTTAGAATTTTATGTTGTGATGATCAGAGATTTTATGACACATTTCAATTTGCTTTGATGTTATAAAGTTGGTGGTATGCATTCTATCTCATGTTACTTAGTGTTAATATTAGAAAGATTGGTATTTGAAGAAGGTTATTAGGAAAAAACATTGAACTCATCTAGTTCAATTGTTTTCTT

Coding sequences of Glyma20g11040

Limit To All Plant Sequences

>Glyma20g11040.2   sequence type=CDS   gene model=Glyma20g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTGTGACTAGTGGGGGTGATAATCGAAAAATATCCAAAGGTCGTCGGTCATCATCATTAGAGGAAGAAGCTGGAGTTGGAGGTAACATAAGAGGAGAAAGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGCCAAAAAACACGGACAAGGCAATTGGAATGCAGTACATAAATATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTGAATTTACTGCAGAAGAAGAGAATCGAATCCTTGAACTACATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATTGCAATCAAGAAAGTCAAAATATTAGCATCCTGTCAAATGAAGCCTCCCAGCATGGTGATCTGTCACAAACAGACTTTGATATACCAGACGTGGAATTCAAAATTTTCAAATTTCGTCATGGTCTATCACATGGACAGTCAATATTTGATATGCCTGAAAGTAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTATAACTTGTTCCCAACTATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATATGATAGTTTTGAAAGTTGTACAATTAATGCTGCCCCACTATTTGATCAGTATGACAATTATACTTCTGAAAAAATTTCTGACCATCCTAGGTTGTCTCTTCCACGTGATCCCGTTCTTAACACCAATGATCAGTTTAATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATGTTTAGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACGTCCCCGCTTCCTTCACTCGAGTCTGTTGATACATTGATTCAGTCTCCTGTTGTTGAGCCTATTCTATTAGATCCCATTTCTCCGCAGAGCAGTGGTTTGCTGGAAGCGATAGTCCACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTACAAGAAACAATTGGTACAACCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATTCCTTTCAGACAAAATGGTATGAACTAGGGGAGCCAAATTCCCCCTTTGGTCAATCTGCTGCTTCAGTTCTAATTGAGTATACTCCTGTAAGCATGTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCACCCAATTTCCAGACAGTTCCAGGAAGAAAAAAAATATATTGAAACAGATGGATTATACACAGCCAGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACCGAGTATGGAAGTGATCAATCTGTTCTGCAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGCGCTAG

>Glyma20g11040.3   sequence type=CDS   gene model=Glyma20g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATTGCAATCAAGAAAGTCAAAATATTAGCATCCTGTCAAATGAAGCCTCCCAGCATGGTGATCTGTCACAAACAGACTTTGATATACCAGACGTGGAATTCAAAATTTTCAAATTTCGTCATGGTCTATCACATGGACAGTCAATATTTGATATGCCTGAAAGTAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTATAACTTGTTCCCAACTATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATATGATAGTTTTGAAAGTTGTACAATTAATGCTGCCCCACTATTTGATCAGTATGACAATTATACTTCTGAAAAAATTTCTGACCATCCTAGGTTGTCTCTTCCACGTGATCCCGTTCTTAACACCAATGATCAGTTTAATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATGTTTAGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACGTCCCCGCTTCCTTCACTCGAGTCTGTTGATACATTGATTCAGTCTCCTGTTGTTGAGCCTATTCTATTAGATCCCATTTCTCCGCAGAGCAGTGGTTTGCTGGAAGCGATAGTCCACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTACAAGAAACAATTGGTACAACCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATTCCTTTCAGACAAAATGGTATGAACTAGGGGAGCCAAATTCCCCCTTTGGTCAATCTGCTGCTTCAGTTCTAATTGAGTATACTCCTGTAAGCATGTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCACCCAATTTCCAGACAGTTCCAGGAAGAAAAAAAATATATTGAAACAGATGGATTATACACAGCCAGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACCGAGTATGGAAGTGATCAATCTGTTCTGCAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGCGCTAG

Predicted protein sequences of Glyma20g11040

Limit To All Plant Sequences

>Glyma20g11040.2   sequence type=predicted peptide   gene model=Glyma20g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVTSGGDNRKISKGRRSSSLEEEAGVGGNIRGESPLKKGPWTAAEDAILVEYAKKHGQGNWNAVHKYSGLARCGKSCRLRWANHLRPDLKKGEFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNCNQESQNISILSNEASQHGDLSQTDFDIPDVEFKIFKFRHGLSHGQSIFDMPESSLFDQSSDSSHSYNLFPTMRPTKRPRESEMLYDSFESCTINAAPLFDQYDNYTSEKISDHPRLSLPRDPVLNTNDQFNGDNLTGSHAALNGNASSSVPMFRAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPVVEPILLDPISPQSSGLLEAIVHNSKSLKGSNNDLLLQETIGTTNEVAKSSTLNHSFQTKWYELGEPNSPFGQSAASVLIEYTPVSMCSVDGPQSIETTQDHDDKHEALTTQFPDSSRKKKNILKQMDYTQPDALLDLGWFGNSTEYGSDQSVLQDALSALLGEDCQR*

>Glyma20g11040.3   sequence type=predicted peptide   gene model=Glyma20g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRAGLPIYPEELCQRILNCNQESQNISILSNEASQHGDLSQTDFDIPDVEFKIFKFRHGLSHGQSIFDMPESSLFDQSSDSSHSYNLFPTMRPTKRPRESEMLYDSFESCTINAAPLFDQYDNYTSEKISDHPRLSLPRDPVLNTNDQFNGDNLTGSHAALNGNASSSVPMFRAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPVVEPILLDPISPQSSGLLEAIVHNSKSLKGSNNDLLLQETIGTTNEVAKSSTLNHSFQTKWYELGEPNSPFGQSAASVLIEYTPVSMCSVDGPQSIETTQDHDDKHEALTTQFPDSSRKKKNILKQMDYTQPDALLDLGWFGNSTEYGSDQSVLQDALSALLGEDCQR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain