Glyma20g11013 - SoyBase

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Report for Sequence Feature Glyma20g11013

Feature Type:	gene_model
Chromosome:	Gm20
Start:	15551488
stop:	15553809
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g11013

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7JHM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR1 n=1 Tax=Medicago truncatula RepID=G7JHM5_MEDTR	SoyBase	E_val: 4.00E-11	ISS
UniRef100_I1K116	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K116_SOYBN	SoyBase	E_val: 1.00E-15	ISS

Expression Patterns of Glyma20g11013

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g11013 not represented in the dataset	Glyma20g11013 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g11013 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g047700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g11013

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g11013

Limit To All Plant Sequences

>Glyma20g11013.2   sequence type=transcript   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTCATTCTATTTTTTGCGATTTTGGTTTGGGTTCTTTTTCTTTGATTGGTCTGATTTTTTGTGGTTTTTTTTTTTTTGGAACAGGCTATAGTGACAATAACGGCTTTGGCAAAGAAGTTGTTGGAGAAGTTAAGAGGAAGATAGTGGTTTTTCTATTTTGATTTTATTAAAACGGTGTCTATGTTTTTTTTTGTCTGATTTTTTGTGGTTTTTTTAGATGCTTCGTTGCTATTTTTTCCTTAAACTTATATTTCTGATATTGTTCAGAGTTTTACGGGATAGTCTACGAGGGTGTCTGTGGCTCAGTGATATTTCGGGTTCAATCGCTTACATTTGCTTGATGGAGAGGTCACTATTGACACAATTACGATACTCTTCTCTTTTTTTTTTCTTTTTCTAAAGTGGTTGATGATTACTGTTTTTTTCCCTCACTTCTGGCTCCCGTTGTGTATTGTCTCTCATCCACTCCCTATCATTGGAATTTGTAACTATTCTAACTGTATTGTAATTTCATTCTTACGATTCTCGCTAAATGTTATTGTCTCCTATACACTCATAGAATCATTGACCCCATATAATTAAATTCCTAGGTTCAAAGTTCAAACAGTTATTTCCTAATGGCATTTTGCATTTTTCGCTTTTGATCCACGGGCTTGAGGTTCCATGACTTTTCTTTCTCATGGGTCTTCTCAAGTTCCTTTTTTAATTGATTTGTAGCTTAGACTTCCCAATTTGCTTTTGACTTCATGTTCTGTTTTCAATGGTTTGTTGTGGCCATTTGGATTGTTGTTGTGCTTTTCAACTCCAATGATATTCTAAGGAAACAAAGTGCGTTGAAGGTGCAGAGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCACACTTTATGTGGAGTCGTTGGGTCTTATGGCGCTTTCTCCGGCTTTGACAATTATGCTGGGTTTTGTGATTTATGAAAATAGAACAAGTGGGTTGTATATTGAAAAGAAGCAGGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTATAATTAGAGCCAAATCTAGCAGATGGGTTATTGGAACCATCGTTCTATGTATGTTCCAAAAATAAATAGTAGGGATTTTTTTTTCCTTTTTACTATATTTTATTATTGAGTATTATTGCATTCAAATTCAATCATATGTAATGTATAAACTTGGCCTTCTCCTGTTTTGCATCTTT

>Glyma20g11013.3   sequence type=transcript   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTCATTCTATTTTTTGCGATTTTGGTTTGGGTTCTTTTTCTTTGATTGGTCTGATTTTTTGTGGTTTTTTTTTTTTTGGAACAGGCTATAGTGACAATAACGGCTTTGGCAAAGAAGTTGTTGGAGAAGTTAAGAGGAAGATAGTGGTTTTTCTATTTTGATTTTATTAAAACGGTGTCTATGTTTTTTTTTGTCTGATTTTTTGTGGTTTTTTTAGATGCTTCGTTGCTATTTTTTCCTTAAACTTATATTTCTGATATTGTTCAGAGTTTTACGGGATAGTCTACGAGGGTGTCTGTGGCTCAGTGATATTTCGGGTTCAATCGCTTACATTTGCTTGATGGAGAGGTCACTATTGACACAATTACGATACTCTTCTCTTTTTTTTTTCTTTTTCTAAAGTGGTTGATGATTACTGTTTTTTTCCCTCACTTCTGGCTCCCGTTGTGTATTGTCTCTCATCCACTCCCTATCATTGGAATTTGTAACTATTCTAACTGTATTGTAATTTCATTCTTACGATTCTCGCTAAATGTTATTGTCTCCTATACACTCATAGAATCATTGACCCCATATAATTAAATTCCTAGGTTCAAAGTTCAAACAGTTATTTCCTAATGGCATTTTGCATTTTTCGCTTTTGATCCACGGGCTTGAGGTTCCATGACTTTTCTTTCTCATGGGTCTTCTCAAGTTCCTTTTTTAATTGATTTGTAGCTTAGACTTCCCAATTTGCTTTTGACTTCATGTTCTGTTTTCAATGTGAGTTGAGTTATCTGAGGATGCATGCAAAGAAGTCAATACAATCCTTTGCACTTTCTCTTTAGGATTCAATCCATGTGCTTAAATATATTTTGATTCTGATTTCTAAATAGATGTTCGGTGTGAATGATTTGTTTTCTTGCTTAAATATATTTAAGCACCAGTTATGTGTGTGTTTAGGATTCAATTCATGTGCTCCTGAATAGATGTTTGGTTGTTCATTGCTAGGGTGATTTGTTTCCGTCATATCCATCACTTTTGTTGGGTATTGCAATGCAGGGTTTGTTGTGGCCATTTGGATTGTTGTTGTGCTTTTCAACTCCAATGATATTCTAAGGAAACAAAGTGCGTTGAAGGTGCAGAGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCACACTTTATGTGGAGTCGTTGGGTCTTATGGCGCTTTCTCCGGCTTTGACAATTATGCTGGGTTTTGTGATTTATGAAAATAGAACAAGTGGGTTGTATATTGAAAAGAAGCAGGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTATAATTAGAGCCAAATCTAGCAGATGGGTTATTGGAACCATCGTTCTATGTATGTTCCAAAAATAAATAGTAGGGATTTTTTTTTCCTTTTTACTATATTTTATTATTGAGTATTATTGCATTCAAATTCAATCATATGTAATGTATAAACTTGGCCTTCTCCTGTTTTGCATCTTT

Coding sequences of Glyma20g11013

Limit To All Plant Sequences

>Glyma20g11013.1   sequence type=CDS   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTACTGTTTTTTTCCCTCACTTCTGGCTCCCGTTGTGTATTGTCTCTCATCCACTCCCTATCATTGGAATTTGGTTTGTTGTGGCCATTTGGATTGTTGTTGTGCTTTTCAACTCCAATGATATTCTAAGGAAACAAAGTGCGTTGAAGGTGCAGAGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCACACTTTATGTGGAGTCGTTGGGTCTTATGGCGCTTTCTCCGGCTTTGACAATTATGCTGGGTTTTGTGATTTATGAAAATAGAACAAGTGGGTTGTATATTGAAAAGAAGCAGGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTATAATTAGAGCCAAATCTAGCAGATGGGTTATTGGAACCATCGTTCTATGTATGTTCCAAAAATAA

>Glyma20g11013.2   sequence type=CDS   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTGTTTTCAATGGTTTGTTGTGGCCATTTGGATTGTTGTTGTGCTTTTCAACTCCAATGATATTCTAAGGAAACAAAGTGCGTTGAAGGTGCAGAGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCACACTTTATGTGGAGTCGTTGGGTCTTATGGCGCTTTCTCCGGCTTTGACAATTATGCTGGGTTTTGTGATTTATGAAAATAGAACAAGTGGGTTGTATATTGAAAAGAAGCAGGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTATAATTAGAGCCAAATCTAGCAGATGGGTTATTGGAACCATCGTTCTATGTATGTTCCAAAAATAA

>Glyma20g11013.3   sequence type=CDS   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCACACTTTATGTGGAGTCGTTGGGTCTTATGGCGCTTTCTCCGGCTTTGACAATTATGCTGGGTTTTGTGATTTATGAAAATAGAACAAGTGGGTTGTATATTGAAAAGAAGCAGGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTATAATTAGAGCCAAATCTAGCAGATGGGTTATTGGAACCATCGTTCTATGTATGTTCCAAAAATAA

Predicted protein sequences of Glyma20g11013

Limit To All Plant Sequences

>Glyma20g11013.1   sequence type=predicted peptide   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITVFFPHFWLPLCIVSHPLPIIGIWFVVAIWIVVVLFNSNDILRKQSALKVQRERKMLVLVGISVGFTLYVESLGLMALSPALTIMLGFVIYENRTSGLYIEKKQVKFKGDTEELTLDGSVDWHGRPIIRAKSSRWVIGTIVLCMFQK*

>Glyma20g11013.2   sequence type=predicted peptide   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCFQWFVVAIWIVVVLFNSNDILRKQSALKVQRERKMLVLVGISVGFTLYVESLGLMALSPALTIMLGFVIYENRTSGLYIEKKQVKFKGDTEELTLDGSVDWHGRPIIRAKSSRWVIGTIVLCMFQK*

>Glyma20g11013.3   sequence type=predicted peptide   gene model=Glyma20g11013   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVLVGISVGFTLYVESLGLMALSPALTIMLGFVIYENRTSGLYIEKKQVKFKGDTEELTLDGSVDWHGRPIIRAKSSRWVIGTIVLCMFQK*

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