SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10270 | AT | Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0600 | KOG | Cdc2-related protein kinase | JGI | ISS | |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | ISS | |
| PTHR24056:SF77 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_B9RVM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVM0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DBC9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DBC9 related cluster n=1 Tax=unknown RepID=UPI000233DBC9 | SoyBase | E_val: 0 | ISS |
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Glyma20g10960 not represented in the dataset |
Glyma20g10960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g048000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g10960.1 sequence type=CDS gene model=Glyma20g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATGGCAGCCCCCGGGCAACTCAACGTGAACGAGTCACCTTCGTGGGGTTCCAGAAGCGTCGATTGCTTTGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTATATGGCTAGAGAGATTAAAACTGGAGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTGAAGAAATTGCACCATGAAAATGTAATCAACTTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTCTGACTGGGCTACATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCGAATCTTCTCATAGACAATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGACCCCCTGAGCTGCTGCTTGGGACAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTAGGGTGCATTTTTGCAGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCCGGTGTTTCTAAGACTCCTTGGTATAATCAATTTAAGCCTACAAGACCAATGAAAAGACGTCTCCGGGAAGTTTTCAGACATTTTGATCGTCATGCCCTGGAATTGTTGGAGAAGATGCTGACTCTTGATCTCGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACGGATCCATTACCATGTGATCCTAAGAGTTTACCCAAATACGAGTCATCGCATGAGTTTCAGACCAAGAAAAAACGTCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCTCAGCAGCATACACGTTTGCCCCCCATTCAGCAGGCTGGGCAACAACACCCCCAAATGCGGCAAGGTCCTAACCACCCTATTCATGGGTCTCAACCAGCAGTTGCTGCAGGACCTAGCCATCATTATGGAAAGCCTCGAGGTCCTTCTGGTGGGCCAGGAAGATATCCTTCTGGTGGGAACTCTGGTGGGGGATACAATCACCCGAATCGTGCAGGTCAAGGAGGAGGAAGTGGTTATGGAAGTGGGCCATATCCTCCTCAAGGGCGGGGTGCACCTTATGGGTCAAGTGGTATGCCCGGTGGGCCCAGTGGTGGTCCTCGTGGTGGGGGTGGAAGCGGCTATGGAGTTGGAGCTCCAAATTATCCTCAAGGTGCTCCTTATGGTGGATCGGCAGCTGGGCGTGGATCAAACATGATGGGTGGTAACCGCAACCAACAGTATGGTTGGCAGCAGTAA
>Glyma20g10960.1 sequence type=predicted peptide gene model=Glyma20g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVINLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDLAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQAGQQHPQMRQGPNHPIHGSQPAVAAGPSHHYGKPRGPSGGPGRYPSGGNSGGGYNHPNRAGQGGGSGYGSGPYPPQGRGAPYGSSGMPGGPSGGPRGGGGSGYGVGAPNYPQGAPYGGSAAGRGSNMMGGNRNQQYGWQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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