Glyma20g10880 - SoyBase

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Report for Sequence Feature Glyma20g10880

Feature Type:	gene_model
Chromosome:	Gm20
Start:	15229091
stop:	15234941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g10880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20320	AT	Annotation by Michelle Graham. TAIR10: trigalactosyldiacylglycerol2 \| chr3:7087657-7089640 REVERSE LENGTH=381	SoyBase	E_val: 0	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0032365	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular lipid transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005319	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid transporter activity	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
PF02470	PFAM	mce related protein	JGI		ISS
UniRef100_G7K7Q7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABC-type transport system involved in resistance to organic solvents periplasmic component n=1 Tax=Medicago truncatula RepID=G7K7Q7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NE22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE22_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g10880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g10880

Paralog	Evidence	Comments
Glyma13g03930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g10880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g048400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g10880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g10880

Limit To All Plant Sequences

>Glyma20g10880.1   sequence type=CDS   gene model=Glyma20g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTACTAACCCTTCATTGCATGCTTCAACATTGCCAAGTGCTTTATCTTCATCTCTGATTACTCTACATGGAAGTTCTGTAAAGTGTATGCCCTGCCTTCCATTTAGAGCCCTAAGAAAAATCAACTGGATAAGAGCTACATCTGCTGCAGATGGAGGGCCTATTGAGTCATCGCCAGCTTTGGGATCAAAAAATCCTCTTGCGGTTGTTTTGGACATTCCTCGTACCATTTGGAAGAAAACAATGCGTCCATTAAGTGATTTTGGGTTTGGTGGTAGGAGCATATGGGAAGGTGGGGTAGGATTGTTTTTAGTTTCAAGTGCGGTTCTATTTGCGCTTAGTTTGGCCTGGTTGAAGGGTTTCCAAATGCGATCCAAATTCAGGAAGTACACAGCAACATTTGAGTTTGATCAGGCTTGCGGTATTTGCACTGGAACTCCTGTGAGGATCAGAGGGGTGACTGTAGGTGATGTCATTCGTGTGAATCCTTCCTTAAGAAGTATTGAAGCTATTGTTGAGATTGAAGACGATAAAACAATCATACCGCGAAATTCATTGGTTGAAGTAAACCAGTCAGGTCTTCTTATGGAAACTATAATCGACATTACTCCTCGTGATCCTATTCCAACACCTTCGGCTGGACCTCTTGACCAAGAATGTTCTAAAGAAGCACTCATTGTGTGTGATAGAGAAAAGATTAAGGGTATAGAAGGAGTGAGTTTGGATAAATTGGTTGGGATATTTACCCGTCTTGGGCAAGATGTAGAGAAAATTGGCATTGTTAATAGCTATTCGTTGGCTGAACGAGCTGCTTCAATTATCAAAGAAGCGAAACCACTTCTTATAAAGATGAAAGCCATGGCTGAAGATGTTCAACCTTTGTTGACTGAAGTCCGTGATAGTGGCCTGTTGAAGGAAGTTGAGAATTTAACCCGAAGCCTTACACAAGCAACTGAGGATTTGAGAAGGGTACACTCATCCATAATGACCCCTGAGAACACTGAACTGCTCCAAAAGTCCATATATACTCTTATTTTTACCCTGAAGAACATTGAGAATGTTAGCTCGGATATTTTGGGTTTCACTGGCGATGAAGCTACAAGAAAGAGTTTGAAATTACTTATCAAGTCCCTCAGCAGGTTATTGTGA

Predicted protein sequences of Glyma20g10880

Limit To All Plant Sequences

>Glyma20g10880.1   sequence type=predicted peptide   gene model=Glyma20g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITNPSLHASTLPSALSSSLITLHGSSVKCMPCLPFRALRKINWIRATSAADGGPIESSPALGSKNPLAVVLDIPRTIWKKTMRPLSDFGFGGRSIWEGGVGLFLVSSAVLFALSLAWLKGFQMRSKFRKYTATFEFDQACGICTGTPVRIRGVTVGDVIRVNPSLRSIEAIVEIEDDKTIIPRNSLVEVNQSGLLMETIIDITPRDPIPTPSAGPLDQECSKEALIVCDREKIKGIEGVSLDKLVGIFTRLGQDVEKIGIVNSYSLAERAASIIKEAKPLLIKMKAMAEDVQPLLTEVRDSGLLKEVENLTRSLTQATEDLRRVHSSIMTPENTELLQKSIYTLIFTLKNIENVSSDILGFTGDEATRKSLKLLIKSLSRLL*

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