SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27690 | AT | Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 26B | chr4:13824324-13826235 FORWARD LENGTH=275 | SoyBase | E_val: 1.00E-63 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuolar transport | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0042147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR12233 | Panther | VACUOLAR PROTEIN SORTING 26 RELATED | JGI | ISS | |
| PF03643 | PFAM | Vacuolar protein sorting-associated protein 26 | JGI | ISS | |
| UniRef100_B9T2W4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting 26, vps26, putative n=1 Tax=Ricinus communis RepID=B9T2W4_RICCO | SoyBase | E_val: 4.00E-65 | ISS |
| UniRef100_UPI000233DC0B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC0B related cluster n=1 Tax=unknown RepID=UPI000233DC0B | SoyBase | E_val: 4.00E-72 | ISS |
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Glyma20g10866 not represented in the dataset |
Glyma20g10866 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g03920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g048500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g10866.2 sequence type=transcript gene model=Glyma20g10866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGCCATTTGAAACCCGCAACGCCACCGCTATTTGGTGGCGTTTTTTCAAAAATTCGTGCCGCCATACCGCCGTGGCGCCGCCATTTGACAACACTGCCCCTTGCAATGATTGCACTATGGTACGCAATTATTCTCCAGCTCCACCATTTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACAGAGAGTTTGAATACGGAAAAAGCAAGTACCATCTGAAGGATGTCATCGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAAGACCCGGTCAAAGTTCGACCCCTGATGAATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCCACATACCGCAACATCAACAACAAGTTCAGTGTGAAGTACTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACTGTATATCGGCTAAGTGAAAACTCCTGAATCTTAGTCCA
>Glyma20g10866.1 sequence type=CDS gene model=Glyma20g10866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGCCATTTGAAACCCGCAACGCCACCGCTATTTGGTGGCGTTTTTTCAAAAATTCGTGCCGCCATACCGCCGTGGCGCCGCCATTTGACAACACTGCCCCTTGCAATGATTGCACTATGGTACGCAATTATTCTCCAGCTCCACCATTTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACAGAGAGTTTGAATACGGAAAAAGCAAGTACCATCTGAAGGATGTCATCGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAAGACCCGGTCAAAGTTCGACCCCTGATGAATGGTGTTCCAGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCCACATACCGCAACATCAACAACAAGTTCAGTGTGAAGTACTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACTGTATATCGGCTAAGTGAAAACTCCTGA >Glyma20g10866.2 sequence type=CDS gene model=Glyma20g10866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGCCATTTGAAACCCGCAACGCCACCGCTATTTGGTGGCGTTTTTTCAAAAATTCGTGCCGCCATACCGCCGTGGCGCCGCCATTTGACAACACTGCCCCTTGCAATGATTGCACTATGGTACGCAATTATTCTCCAGCTCCACCATTTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACAGAGAGTTTGAATACGGAAAAAGCAAGTACCATCTGAAGGATGTCATCGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAAGACCCGGTCAAAGTTCGACCCCTGATGAATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGA
>Glyma20g10866.1 sequence type=predicted peptide gene model=Glyma20g10866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPFETRNATAIWWRFFKNSCRHTAVAPPFDNTAPCNDCTMVRNYSPAPPFNNSIKMEVGIEECLHREFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELERPGQSSTPDEWCSRESIPVRLFLSPYELTPTYRNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS* >Glyma20g10866.2 sequence type=predicted peptide gene model=Glyma20g10866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPFETRNATAIWWRFFKNSCRHTAVAPPFDNTAPCNDCTMVRNYSPAPPFNNSIKMEVGIEECLHREFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELERPGQSSTPDEWCSSPRRINSCEIVPQSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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