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Report for Sequence Feature Glyma20g10820

Feature Type:gene_model
Chromosome:Gm20
Start:15039921
stop:15041749
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g10820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43810AT Annotation by Michelle Graham. TAIR10: calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149 SoyBaseE_val: 5.00E-90ISS
GO:0005513GO-bp Annotation by Michelle Graham. GO Biological Process: detection of calcium ion SoyBaseN/AISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0010099GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0019932GO-bp Annotation by Michelle Graham. GO Biological Process: second-messenger-mediated signaling SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR23050Panther CALCIUM BINDING PROTEIN JGI ISS
PTHR23050:SF20Panther CALMODULIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_A2WN93UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-1 n=51 Tax=Eukaryota RepID=CALM1_ORYSI SoyBaseE_val: 1.00E-87ISS
UniRef100_I1NE20UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE20_SOYBN SoyBaseE_val: 5.00E-90ISS

Expression Patterns of Glyma20g10820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g10820
ParalogEvidenceComments
Glyma13g03910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g10820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g048900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g10820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g10820
>Glyma20g10820.1   sequence type=CDS   gene model=Glyma20g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACCAGCTCACCGACGACCAGATCGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGACGGCGATGGTTGCATTACTACCAAGGAACTTGGGACTGTTATGAGGTCACTTGGTCAAAACCCAACTGAGGCAGAACTGCAGGATATGATAAACGAGGTTGATGCTGATGGCAACGGAACCATCGATTTCCCAGAGTTCCTCAACCTGATGGCTCGCAAGATGAAAGACACCGACTCAGAGGAGGAGCTTAAGGAGGCTTTCCCGTCTGAGCTCCGCCATGTCATGACAAATCTTGGGGAGAAGCTGACGGACGAGGAGGTGGATGAGATGATCCGTGAGGCCGATGTTGACGGTGATGGACAGATCAACTATGAGGAGTTTGTCAAAGTCATGATGGCCAAGTGA
Predicted protein sequences of Glyma20g10820
>Glyma20g10820.1   sequence type=predicted peptide   gene model=Glyma20g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFPSELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*






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