Glyma20g10360 - SoyBase

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Report for Sequence Feature Glyma20g10360

Feature Type:	gene_model
Chromosome:	Gm20
Start:	14525574
stop:	14536698
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g10360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12640	AT	Annotation by Michelle Graham. TAIR10: RNA recognition motif (RRM)-containing protein \| chr4:7462697-7467630 FORWARD LENGTH=823	SoyBase	E_val: 4.00E-138	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4206	KOG	Spliceosomal protein snRNP-U1A/U2B	JGI		ISS
PTHR23189	Panther	RNA RECOGNITION MOTIF-CONTAINING	JGI		ISS
PTHR23189:SF32	Panther	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J619	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flowering time control protein FPA n=1 Tax=Medicago truncatula RepID=G7J619_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B801	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B801 related cluster n=1 Tax=unknown RepID=UPI000233B801	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g10360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g10360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g049400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g10360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g10360

Limit To All Plant Sequences

>Glyma20g10360.2   sequence type=transcript   gene model=Glyma20g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATAAACATTAAAAATTAGAAAACAGAAAACGCTAAAAGCTTTAACTGGCCCCTTATCTAGTTAGTTTACTACCATTTTGGATCGGTGGCATTTATTTCCCCTGTATTGCTATCAAGTACCACCACCGATCCTCAGAACAGAAACCCTAAGCATAATCACTGATTACTCTCTTTCGGCGACATCAACACTGAGTGAAGAAGAAGAAGAAGGAGAATCATCGTTCCCTCTTTTCTCGATACACCAAATTGCTGAAGCAGAAGTTCCGAATTCCGTCTCTCTCTCTCTCAAATTGTCCTCTTAACTTCGCCATGTCGGGTCGAGGAGGAGGAAGGGATCGGTTTAGGAGGGATTATCCTTCAAGGCATGAGGATAATAGGGGGAATGGGATTAGTGGACGTGACAACCGCAACAGCAACAGCAACAACCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCCCACAATATTGTAGAGGAAGAACTTGCTCACCATTTCTTGAGGTACGGACCACTGGAGAATGTGGCATTCCAGCCCGGCCGCAGCTATGCTTTCATAAATTTCAGAATGGATGAGGATGCTATTGATGCCTTGAGAGCACTGCAAGGCTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCGGCAATGCAACGTGATGAAGATTGCTCATGGGATGAACGGAACTCAGCATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCTGAATTGCATTATTCTGATAAATCCAAGCTGAGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGACGAATCTATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCCTGCAGAGCAAGAGACGATCTGAAGGGGAAGTTATTTGGGAATCCCCGGGTGCATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCTCGTTCCCCAATTTACAAGTCAAGTGGGCGTGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCGCAACATTGGTTCTCCAAACCATTTCGGGATTTGGGATTCTGATCCTTATGATCAAAGGGGTTCTTCATGGACTGGCGGAACTAACACATTTGAACAAAGGAAAGTCGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATCATGTGGGTAATGTTCCACAGAGATTTTCTCAAAAGGGTGAATTCTTTGAAGATCCGCGGGCCTTGCCAGATTTTTCCTATCTACATGAGGCTAAAAGGATGAAGGCTGGTTCTCCACCTCTTGAAAGAGAGATTCCAGAGTATCCTTTCACTGAGTATGAAAGGCAGAGACGTGTTTTCCCGAGATTATCGGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGACCAGACTCTTGATCATCCACCAAATTCACCTTTGCCTCGTTTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTCCAAATGGGTCCTAGCGCTCTGCAGTCAACATATGTTGAGAAGAAAGGATTCACGCCTGAACAAGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATGATGTTGTAA

Coding sequences of Glyma20g10360

Limit To All Plant Sequences

>Glyma20g10360.1   sequence type=CDS   gene model=Glyma20g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAGCCATCGGCAATGCAACGTGATGAAGATTGCTCATGGGATGAACGGAACTCAGCATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCTGAATTGCATTATTCTGATAAATCCAAGCTGAGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGACGAATCTATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCCTGCAGAGCAAGAGACGATCTGAAGGGGAAGTTATTTGGGAATCCCCGGGTGCATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCTCGTTCCCCAATTTACAAGTCAAGTGGGCGTGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCGCAACATTGGTTCTCCAAACCATTTCGGGATTTGGGATTCTGATCCTTATGATCAAAGGGGTTCTTCATGGACTGGCGGAACTAACACATTTGAACAAAGGAAAGTCGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATCATGTGGGTAATGTTCCACAGAGATTTTCTCAAAAGGGTGAATTCTTTGAAGATCCGCGGGCCTTGCCAGATTTTTCCTATCTACATGAGGCTAAAAGGATGAAGGCTGGTTCTCCACCTCTTGAAAGAGAGATTCCAGAGTATCCTTTCACTGAGTATGAAAGGCAGAGACGTGTTTTCCCGAGATTATCGGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGACCAGACTCTTGATCATCCACCAAATTCACCTTTGCCTCGTTTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTCCAAATGGGTCCTAGCGCTCTGCAGTCAACATATGTTGAGAAGAAAGGATTCACGCCTGAACAAGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATGATGTTGTAA

>Glyma20g10360.2   sequence type=CDS   gene model=Glyma20g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTCGAGGAGGAGGAAGGGATCGGTTTAGGAGGGATTATCCTTCAAGGCATGAGGATAATAGGGGGAATGGGATTAGTGGACGTGACAACCGCAACAGCAACAGCAACAACCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCCCACAATATTGTAGAGGAAGAACTTGCTCACCATTTCTTGAGGTACGGACCACTGGAGAATGTGGCATTCCAGCCCGGCCGCAGCTATGCTTTCATAAATTTCAGAATGGATGAGGATGCTATTGATGCCTTGAGAGCACTGCAAGGCTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCGGCAATGCAACGTGATGAAGATTGCTCATGGGATGAACGGAACTCAGCATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCTGAATTGCATTATTCTGATAAATCCAAGCTGAGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGACGAATCTATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCCTGCAGAGCAAGAGACGATCTGAAGGGGAAGTTATTTGGGAATCCCCGGGTGCATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCTCGTTCCCCAATTTACAAGTCAAGTGGGCGTGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCGCAACATTGGTTCTCCAAACCATTTCGGGATTTGGGATTCTGATCCTTATGATCAAAGGGGTTCTTCATGGACTGGCGGAACTAACACATTTGAACAAAGGAAAGTCGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATCATGTGGGTAATGTTCCACAGAGATTTTCTCAAAAGGGTGAATTCTTTGAAGATCCGCGGGCCTTGCCAGATTTTTCCTATCTACATGAGGCTAAAAGGATGAAGGCTGGTTCTCCACCTCTTGAAAGAGAGATTCCAGAGTATCCTTTCACTGAGTATGAAAGGCAGAGACGTGTTTTCCCGAGATTATCGGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGACCAGACTCTTGATCATCCACCAAATTCACCTTTGCCTCGTTTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTCCAAATGGGTCCTAGCGCTCTGCAGTCAACATATGTTGAGAAGAAAGGATTCACGCCTGAACAAGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATGATGTTGTAA

Predicted protein sequences of Glyma20g10360

Limit To All Plant Sequences

>Glyma20g10360.1   sequence type=predicted peptide   gene model=Glyma20g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKPSAMQRDEDCSWDERNSALRGSPFSQREFRGHHGSPELHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDDLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKSSGRDGSSENLRQDRSFNADRNIGSPNHFGIWDSDPYDQRGSSWTGGTNTFEQRKVGEKGRTLGVSQEIYEHMNSPSRERHHVGNVPQRFSQKGEFFEDPRALPDFSYLHEAKRMKAGSPPLEREIPEYPFTEYERQRRVFPRLSDLPPHEPFDKGFDAGNFTYDQTLDHPPNSPLPRLDRHEGWKPYDSFQMGPSALQSTYVEKKGFTPEQDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDMML*

>Glyma20g10360.2   sequence type=predicted peptide   gene model=Glyma20g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGRGGGRDRFRRDYPSRHEDNRGNGISGRDNRNSNSNNPPSRHLWVGNLSHNIVEEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKADKPSAMQRDEDCSWDERNSALRGSPFSQREFRGHHGSPELHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDDLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKSSGRDGSSENLRQDRSFNADRNIGSPNHFGIWDSDPYDQRGSSWTGGTNTFEQRKVGEKGRTLGVSQEIYEHMNSPSRERHHVGNVPQRFSQKGEFFEDPRALPDFSYLHEAKRMKAGSPPLEREIPEYPFTEYERQRRVFPRLSDLPPHEPFDKGFDAGNFTYDQTLDHPPNSPLPRLDRHEGWKPYDSFQMGPSALQSTYVEKKGFTPEQDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDMML*

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