Glyma20g10310 - SoyBase

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Report for Sequence Feature Glyma20g10310

Feature Type:	gene_model
Chromosome:	Gm20
Start:	14408529
stop:	14414185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g10310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43720	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr3:15615549-15617099 REVERSE LENGTH=191	SoyBase	E_val: 2.00E-26	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_B7FFE5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein-like protein n=1 Tax=Medicago truncatula RepID=B7FFE5_MEDTR	SoyBase	E_val: 4.00E-55	ISS
UniRef100_I1NE15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NE15_SOYBN	SoyBase	E_val: 1.00E-172	ISS

Expression Patterns of Glyma20g10310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g10310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g049800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g10310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g10310

Limit To All Plant Sequences

>Glyma20g10310.1   sequence type=CDS   gene model=Glyma20g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAATTAACACCCCTGAATTTCACACTCCCTCTCCCAAACTCATCATCCTATAATACAAAGGGTTTGGAATATATATCAAATATCAAAATACATCACAACATCAAAATGGCCTCAATTGTTACTATGGCCACCATTGTCACATTAGTCCTCGCACTAGCATGTTGTGGCATGTCTGCCCCGACCTCAGTGCCGAAAACCACTGCAGCGGCCCCGGCCCCGGAGAGCAATGGCTGCTTGATGGCACTAGCAAACATGTCAGATTGTCTGACCTATGTTGAGGATGGGAGTAAGTTGTCAAAGCCCGACAAAGGGTGCTGCCCTGAGTTGGCAGGGTTGGTTGATAGCAACCCCATTTGCTTGTGTGAGATGCTAGGCAAACCTGACTCTATTGGCATCAAAATTGATTTGAACAAAGCCCTCAAGCTTCCTTCTGTTTGTGGAGTGACCACTCCCCCTGTTAGCACCTGTTCCGCTGTGGGAGTCCCCGTGTCCTTGCCTCCATCAATGAGTGAAGGTCCAAGTATTGCACCGGGAGCCTTCAGTCCTTCAAATGCAGATGCTGCGAATCCTGCTTCAAGTCCTAACTCTGCTTCTAGTCCTGCAGGTGGGCTAGGCCCTTCGTCCGAGGATGCTGCTGCCAGCCCTTCTCAAAACAAAAATGAAGTTTCAGCCATTCACCCTTCTGCTTTGACTAATTTCTTTTTTGGCCTTTTCACTTTATTTGTCTCTGTATTCTTCTGA

Predicted protein sequences of Glyma20g10310

Limit To All Plant Sequences

>Glyma20g10310.1   sequence type=predicted peptide   gene model=Glyma20g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKLTPLNFTLPLPNSSSYNTKGLEYISNIKIHHNIKMASIVTMATIVTLVLALACCGMSAPTSVPKTTAAAPAPESNGCLMALANMSDCLTYVEDGSKLSKPDKGCCPELAGLVDSNPICLCEMLGKPDSIGIKIDLNKALKLPSVCGVTTPPVSTCSAVGVPVSLPPSMSEGPSIAPGAFSPSNADAANPASSPNSASSPAGGLGPSSEDAAASPSQNKNEVSAIHPSALTNFFFGLFTLFVSVFF*

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