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Report for Sequence Feature Glyma20g10271

Feature Type:gene_model
Chromosome:Gm20
Start:14374824
stop:14377649
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g10271
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24710AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR22847Panther WD40 REPEAT PROTEIN JGI ISS
PTHR22847:SF52Panther SUBFAMILY NOT NAMED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_I1NBL0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBL0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HV05UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like n=1 Tax=Medicago truncatula RepID=Q2HV05_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g10271
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g10271 not represented in the dataset
Glyma20g10271 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g10271 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g10271
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g10271
>Glyma20g10271.1   sequence type=CDS   gene model=Glyma20g10271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATACATATTTTGTTTACATATTATACTTTTCTTTGCAATATTTATGCATACTGTATAAGTTGTTTCAATTTTCCAATTTTACATGCTGTTGCAGCATGGAGTTCCTTTATAGAACAGGTGGTGATGGTCCTCTTGTTGCTTTTGGTGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGCTTGTGCGAAGGTACACTGGAGGTCATAAGGGGTCTATCTCTTGCTTGATGTCATTCATGGCTGCTTCTGGTGAGGCTCTTCTGGTTTCGGGTGCTAGTGATGGATTGCTCATAATTTGGAGTGCTGACCACGGACAGGATTCACGTGAACTTGTACCCAAGCTGAGTTTAAAAGCACATGATGGAGGGGTTGTGGCAGTTGAGTTGTCAAAGGTGATGGGAGGTGCTCCTCAGCTAATCACAATTGGTGCTGATAAGACATTAGCCATATGGGACACCGTCTCCTTTAAGGAGCTGCGGCGTATAAAGCCAGTTCCTAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTCCAAACCTTTTTTTTTCTTCTAATTTCTGAATTGGCATCAAAATTGAGTGTAACAAAATCTGTGGAAAGCTTTACTTCAATCATGTTATCAGTTTATGTGTATTGTATGGTTGCACATACTTTGCAGCCTCATCTTGTAGCTGTTGGAACCAACATTGGTGTTATTATCTGTGAGTTTGATGCTAGATCTCTTCCACCTGTTGCTCCTCTACCAACCCCATCAGACAGTAAAGAGCATTCTGCCATATTTGTAATTGAAAGGGAATTAAAGCTATTAAATTTTCGGTTAAACAATTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACAGGAAGACCCAAGGGAGATTTTTTTGAACCATTACCTATCAAGCAGGGGAAGAAGCACATAAGTACTCCTGTTCCACATGATTCGCATTCAGTTCTTTCTGTCAGCAGTTCAGGAAAGTATCTAGCAATTGTTTGGCCAGATATTCCTTATTTCTCTGTCTACAAGGTTAGTGATTGGTCAATTGTTGACTCTGGAAGTGCAAGACTTCTCGCTTGGGATACTTGTCGTGACAGATTTGCTATATTGGAATTAGCATTACCGCCTAGAATTCCTATAGTTCCCAAGGGTAGTTCATCAAAAAGAGCGAAAGAAGCTGTTGCGGCACAAGTAGCAGCCGCAGCTACTGCTGCTGCTTCCACAACTTCCTATACATTTTTTGGCTTTGTCACTAGTGGACTCTTTTAG
Predicted protein sequences of Glyma20g10271
>Glyma20g10271.1   sequence type=predicted peptide   gene model=Glyma20g10271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTYFVYILYFSLQYLCILYKLFQFSNFTCCCSMEFLYRTGGDGPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGSISCLMSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKAHDGGVVAVELSKVMGGAPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILQTFFFLLISELASKLSVTKSVESFTSIMLSVYVYCMVAHTLQPHLVAVGTNIGVIICEFDARSLPPVAPLPTPSDSKEHSAIFVIERELKLLNFRLNNSANPSLGNNSSLSETGRPKGDFFEPLPIKQGKKHISTPVPHDSHSVLSVSSSGKYLAIVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILELALPPRIPIVPKGSSSKRAKEAVAAQVAAAATAAASTTSYTFFGFVTSGLF*






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